Pairwise Alignments

Query, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  152 bits (383), Expect = 5e-41
 Identities = 98/351 (27%), Positives = 178/351 (50%), Gaps = 6/351 (1%)

Query: 159 QQVASQLRNQAFMLS-IGFLLVTLIAIYWLLQRTLIAPLNDLKVLCHALASGSCDLSSRI 217
           +Q  S +R +  M+  I FL+ T IA  W + +++  P+ +     + +A G  DL+ RI
Sbjct: 273 EQAMSDIRFKLIMIGFIAFLIGTAIA--WFIAKSITRPIAETTNALNDIAEGEGDLTRRI 330

Query: 218 NFRKDNELGQLANAIDDFIAKVESTFAPIKDRIVEVTDVSHKVEQQIGRLEHNIHNQQSE 277
             +  +E+ QLA A + F  K+ +T A + D    +   + ++       +     Q  E
Sbjct: 331 EVKSKDEIAQLALAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITNETQQMAKRQHLE 390

Query: 278 ISNSVAIGHQSQDSIKAVTESIYAASESLKQAVTSSEDSKAQLREAQTQNQQLVEKAEIT 337
                   ++   +++ V  +   A+++   A  S+E  K  + +  +    L ++    
Sbjct: 391 TEQVATAMNEMAATVQEVAHNATDAADAATHASESTEHGKLLVEKVISTISLLADEIAHA 450

Query: 338 TKTATELNTQVEKVTDILQMIRSIAEQTNLLALNAAIEAARAGENGRGFAVVADEVRHLA 397
            K   EL     ++  +L +IR+IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA
Sbjct: 451 AKAINELERNTAQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLA 510

Query: 398 EKTSASTNQVETLLTQLSGYSRNLIGYMEESLVAARNCVAAI-ESGSNL--VDKAIIDVN 454
            +T AST++++ ++  L   +++ +  M  S    +NCV+ + E+G  L  + +A+  ++
Sbjct: 511 SRTQASTSEIQQMIEALQHSAKSTVSTMNTSTATTQNCVSLVHEAGEALEAITQAVSTIS 570

Query: 455 QANSTNQNAVHDSEQQNRLVEQLLEQLRLLDNHARELLTDSATISEHSKEL 505
           Q N    +A ++    +  + + +  +  +  +A E    +A   +   +L
Sbjct: 571 QMNIQIASAANEQCAVSAEINKNVNNINDITINATESAVQTARAGDELAQL 621