Pairwise Alignments

Query, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  143 bits (361), Expect = 1e-38
 Identities = 98/370 (26%), Positives = 185/370 (50%), Gaps = 14/370 (3%)

Query: 156 DQVQQVASQLRNQAFMLSIGFLLVTLIAIYWLL--QRTLIAPLNDLKVLCHALASGSCDL 213
           D  Q V  Q+  ++ M+ +  L++T    + ++     ++ P+ ++    + +A G  DL
Sbjct: 187 DYRQTVTEQMAEKSLMILLIALVLTGATAFVIMVAAHRMVVPIKNMADNLNDIAKGEGDL 246

Query: 214 SSRINFRKDNELGQLANAIDDFIAKVESTFAPIKDRIVEVTDVSHKVEQQIGRLEHNIHN 273
           + R++ + ++E+ QL  A + F+ K++     +     +V   ++ +  Q   +   + +
Sbjct: 247 TKRLSVKGEDEIAQLGRAFNLFVDKLQHIIGDVASATAKVKTAANAIHDQTKVMSSQLLS 306

Query: 274 QQSEISNSVAIGHQSQDSIKAVTESIYAASESLKQAVTSSEDSKAQLREAQTQNQQLVEK 333
             +E    V    +   +   V ++    +E+ + A     +++  +  +  +   L+E+
Sbjct: 307 HNNETDQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVANAQRCVDASLEEIAALMEQ 366

Query: 334 AEITTKTATELNTQVEKVTDILQMIRSIAEQTNLLALNAAIEAARAGENGRGFAVVADEV 393
                 +   L+ Q +K+  +L +I  IAEQTNLLALNAAIEAARAGE GRGFAVVADEV
Sbjct: 367 INHAAGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 426

Query: 394 RHLAEKTSASTNQVETLLTQLSGYSRNLIGYMEESLVAARNCVAAIESGSNLVDKAIIDV 453
           R LA +T AST ++  +L+ L       +  M+ES    ++CV ++ES S  + +++  V
Sbjct: 427 RSLASRTQASTLEINEMLSALHKLVSQAVKTMDES---QQSCVRSVES-SRAISESLGSV 482

Query: 454 NQA----NSTNQNAVHDSEQQNRLVEQLLEQLRLLDNHARELLTDSATISEHSKELLRSA 509
             A    N  +      + +Q+ + E++   +  +     ELL      SEH+  + ++ 
Sbjct: 483 TSAVTAINDMSTQIATAATEQSSVTEEINRNVYAIQEIVNELLHS----SEHAARVSQTV 538

Query: 510 SQTRSNLKQL 519
           SQ  +NL  L
Sbjct: 539 SQEGTNLGNL 548