Pairwise Alignments

Query, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  157 bits (396), Expect = 1e-42
 Identities = 124/487 (25%), Positives = 224/487 (45%), Gaps = 39/487 (8%)

Query: 39  ISAETFEKTSLSLADNIATAVRFNKTSAISE------RVAIELNANPVQLKNVYTFNAKG 92
           ++++T     ++  DN    ++      I        R  + +     Q+  +   + +G
Sbjct: 30  LASDTLASNEMAFEDNTVANLQVTMAQPIFTYDYEQIRAVLSVMLKSEQIYQITVVDHRG 89

Query: 93  QVLYNAKNTSDTATSLNQWVTQPPSDQAVRKNTDGHEGLLI-IVPLKAGKNADLVGYLVT 151
           ++L   K     A S  Q      SDQ    N  G   +    +P+KA  +  L+GY + 
Sbjct: 90  KLLAEDKQAEIVAASDLQTRELQFSDQG---NPTGRLTIAFSTLPVKAQLSDLLLGYFL- 145

Query: 152 EWGFDQVQQVASQLRNQAFMLSIGFLLVTLIAIYWLLQRTLIAPLNDLKVLCHALASGSC 211
                           QA ++  G LLV    I+ +L+R +I+PL+ +      +A+G  
Sbjct: 146 ----------------QALLILAGSLLV----IFIILKRLVISPLDKVVAALEEIANGDG 185

Query: 212 DLSSRINFRKDNELGQLANAIDDFIAKVESTFAPIKDRIVEVTDVSHKVEQQIGRLEHN- 270
           DLS R+    ++E+G+LANA + F+ ++  T      R+ E + +     + +G L  + 
Sbjct: 186 DLSHRLPVESEDEIGKLANAFNGFVEQIHGTIT----RVHETSGLLLGDAKALGTLSQSN 241

Query: 271 ---IHNQQSEISNSVAIGHQSQDSIKAVTESIYAASESLKQAVTSSEDSKAQLREAQTQN 327
              +  Q  E   +V    Q   S   V  +    +++  QA  + +D + Q        
Sbjct: 242 NQRVQAQLKETEAAVTAVTQLSASANEVAINAKRTADAATQADRAVDDGQRQFDSGLAIT 301

Query: 328 QQLVEKAEITTKTATELNTQVEKVTDILQMIRSIAEQTNLLALNAAIEAARAGENGRGFA 387
           +QL  +   + ++ ++L  + +++ +++ +I SIAEQTNLLALNAAIEAARAGE GRGFA
Sbjct: 302 RQLAGELARSAQSVSQLQQETQRIDEVVVVISSIAEQTNLLALNAAIEAARAGEQGRGFA 361

Query: 388 VVADEVRHLAEKTSASTNQVETLLTQLSGYSRNLIGYMEESLVAARNCVAAIESGSNLVD 447
           VVADEVR LA +T  +T +++ ++ Q+       +  M+ S   +   V   E    ++ 
Sbjct: 362 VVADEVRSLASRTQQATGEIQKMIQQVQSRVAETVNVMQSSQTLSNQGVNRSEEIKLVLS 421

Query: 448 KAIIDVNQANSTNQNAVHDSEQQNRLVEQLLEQLRLLDNHARELLTDSATISEHSKELLR 507
           K    V+  ++ N    H +++Q  + E +   L  L N +     DS  +++ S+ L  
Sbjct: 422 KVTDLVSNISNMNIEVSHAAQEQTCVTEAISRTLNDLANVSGSASLDSEHLAQSSERLFH 481

Query: 508 SASQTRS 514
              + R+
Sbjct: 482 QGERLRT 488