Pairwise Alignments

Query, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  145 bits (367), Expect = 4e-39
 Identities = 108/368 (29%), Positives = 184/368 (50%), Gaps = 9/368 (2%)

Query: 156 DQVQQVASQLRNQAFMLSIGFLLVTLIAIYWLLQRTLIAPLNDLKVLCHALASGSCDLSS 215
           D++ ++A+ L +   M+ +   ++ ++ I  ++ R++IAPL  ++     LAS   DL+ 
Sbjct: 342 DKMDEMATSLGSILLMVGLAVSILAVVTISIVI-RSIIAPLKMIQGRVEHLASADGDLTQ 400

Query: 216 RINFRKDNELGQLANAIDDFIAKVESTFAPIKDRIVEVTDVSHKVEQQIGRLEHN-IHNQ 274
            I      EL  L    + FI K++   + +K  +   T        QI  L H+ +H Q
Sbjct: 401 SIVVDAHAELIALGKGFNSFIHKLKDLISELKT-LAGRTQEESLSSAQIAELTHDSVHRQ 459

Query: 275 QSEISNSV-AIGHQSQDSIKAV--TESIYAASESLKQAVTSSEDSKAQLREAQTQNQQLV 331
             EI + V A+   S  +++    +E   A +E++ + V  SE+S  +  E  T   Q  
Sbjct: 460 YGEIESVVTAVNEMSATALEVAKASEQTAAETEAMSRNVRLSEESLTKAMEYVTTMSQES 519

Query: 332 EKAEITTKTATELNTQVEKVTDILQMIRSIAEQTNLLALNAAIEAARAGENGRGFAVVAD 391
            +A++      E +T + +   IL++I SIA QTNLLALNAAIEAARAGE GRGFAVVAD
Sbjct: 520 MQAKVAVSKVAESSTNISR---ILEVISSIAAQTNLLALNAAIEAARAGEQGRGFAVVAD 576

Query: 392 EVRHLAEKTSASTNQVETLLTQLSGYSRNLIGYMEESLVAARNCVAAIESGSNLVDKAII 451
           EVR LA KT +ST+ +  L+  L     +  G +++    A+  V+  E     ++  + 
Sbjct: 577 EVRALASKTQSSTDDISVLIDALQQEVNSASGIIDKGAERAQMAVSQTEQALTSLNSMVS 636

Query: 452 DVNQANSTNQNAVHDSEQQNRLVEQLLEQLRLLDNHARELLTDSATISEHSKELLRSASQ 511
            + + +S   +    +E+Q+ + E++   +  + + A EL   +    + S  L     Q
Sbjct: 637 QIEEISSQVTHIAAAAEEQSAVTEEVNRNITGISDSASELARLAGEAQQSSVVLAELVKQ 696

Query: 512 TRSNLKQL 519
               L +L
Sbjct: 697 QHQQLGKL 704