Pairwise Alignments

Query, 1085 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1132 a.a., membrane protein, putative from Pseudomonas syringae pv. syringae B728a

 Score =  244 bits (623), Expect = 3e-68
 Identities = 246/1015 (24%), Positives = 432/1015 (42%), Gaps = 82/1015 (8%)

Query: 16  AQNPASA---CPFKQPLIGIIPVRYAFDV--YDDQGQALHPLPKADRQWKGQFSIKQRSY 70
           A+ PA+A   CPF+ P I I+PVRYA D   YD   + L PL K  R W     +K RSY
Sbjct: 17  AKTPATATSLCPFRGPDIAIVPVRYALDRSRYDTAPEKLKPLLKGSR-WAVMPKLKTRSY 75

Query: 71  TLRQLRDGWLYVYDETAKTLHEY--EVVGCKLTKIDWSDDEANKPTHERGSKGESKSCLL 128
           TLRQL DG++YVYDETA T HEY        L++I W+D +        GS  ++K  LL
Sbjct: 76  TLRQLYDGYVYVYDETAGTFHEYVSSAADGHLSRIIWTDAQIGSDQRSGGS--DAKPFLL 133

Query: 129 YPAQHTLSIGYAHQRWTWRVCEHMRSNTSSRHAVMRKVSLKQFESNGTHPHAHFAQYLED 188
           YP  + L I ++ Q+WTWR+CEH+RSN +SR + M+ + LK++      P       + +
Sbjct: 134 YPRSNLLRIAFSAQQWTWRICEHLRSNPASRTSWMKALDLKRYCMTMAEPDTLPLNRIAE 193

Query: 189 YVADIGTP--AEQDIFKDTCTPSLPVEKSEEAVKGTEFKFVADKAVVSSSDYLQDLPEQN 246
            VADI      + D F D+  P+       + VK       AD     S      + ++N
Sbjct: 194 AVADIDKEYVVDDDRFSDSAIPAARPPSDSDEVKALFSPIGADVFWQGS------VEDKN 247

Query: 247 CGLFVALNDPLADVSDLFVTFTT-QVAKRTKAIGDETQQHKMQMAELTRTLGRIRLEEKE 305
             L +AL+DPLA  +DL +     Q A R         +HK+Q+A+   TL     E ++
Sbjct: 248 SSLLIALDDPLAIFNDLGMQLAADQAAYRN---WQAEHEHKIQIAQTVTTLCGAESEPEK 304

Query: 306 IPDFVKQDPIRILELERAITEYCATAKLAEIESHHLASE---GHSPSGNYALMQQ--QAE 360
           +P  V+ +         A+T    +   A  E      E    ++  G   L+    ++ 
Sbjct: 305 LPASVRGN--------AALTHQYLSDVEAYFEQCMFEQEQIGNNTAPGGVLLLPDIFKSP 356

Query: 361 QKLAELKTLYRFEPTSAQMRKWRKKDNSFIDEVRWADLDNFLVEHYTELKGLDEQIKQHY 420
           Q    L+  Y   P+   ++ W+++ + +  EV  +    +L +H      L +Q++   
Sbjct: 357 QMRRSLEMRYGSAPSDDALQAWKER-HKWRREVDLSGARQYLQQHLPTGDTLLKQVRDTQ 415

Query: 421 AQFMSAFNQLGLDPLLFGMDNQDEVQQAYLLALTSQFLVVVTQVNHDEKSLEILKKDLSF 480
           + F      LG +PL   +D        YL  +     ++  Q   D  +   L +  + 
Sbjct: 416 SDFQQWTTHLGTEPLKLFVDTAHPESLLYLQTVMLNLQIIYAQ---DNAASAWLAEQEAN 472

Query: 481 DSPKNLMALASTGFSLQANQAINNHIQGFSTAFLSTSNPSDMVAFATAIANWDTFTGDER 540
           DS  +L      GFS     A++                 D+   AT I   +     + 
Sbjct: 473 DS--SLFGTLRYGFSPALKHALHQEANALLNGL------GDITNLATRIGELNGTLNHQG 524

Query: 541 IQEKAWFKRWIEPAQSSFGALQKAVANQAKESWQAVMELLFPYQNQ-PKGGTPSLLANLR 599
             EK W K   +P Q +F AL +  ++  K ++++++    P  ++   G   +++A +R
Sbjct: 525 FAEKPWMKALKQPVQDTFKALGQLASDAGKATFESILLAWVPIDSRLAVGKQQNIVALIR 584

Query: 600 LLLV-ESLVREEAVLQHNPKYAAELKQFETKLNAILQEMNDALE--LKPGNVSPKNHQIA 656
            LL+ + L+  +A +  +    A+LK + ++   + ++++D     L P   +P+    +
Sbjct: 585 TLLIGQILLDSKARIAIDHTMLAKLKNWISEWQVLNKQISDTRRSWLYPTAYTPRKSIAS 644

Query: 657 TAQSAQRKLGQLLSSELPMMLTLKNQAAMNTFQQSVNEKLSALSKNVKTSSASVSQKLGG 716
             ++ + KL +   S +P +L  +N       Q  +     +     K   ++  + L G
Sbjct: 645 HLRTLEEKLRRHELS-MPALLDFQNNQYAKQLQDEIRLHFQSGKAITKEWLSTARRWLDG 703

Query: 717 LGGLLFALNLWNTMTVLENIRYKVAQYPSWNPFKNPALGEAIYATGNTIVVAGAISAGRA 776
           LGG+  ++     M    N  +          F    +G+  Y  G +  +  A+     
Sbjct: 704 LGGIAGSITWGVIMLNFINTAFTYRDLTRDGNFSTKDIGKVTYGLGYSFNLLMAVFVEAP 763

Query: 777 WVTIA----------EQGLLDRTLKN-ALNTTKVLGTKDALKTFAKSIALVATVGMIASA 825
           W  I+          + G+LD++          V G  DA++ F  S+  +   G+ A  
Sbjct: 764 WAVISTAKPLSIGGYDIGILDKSAAYWKARGNAVWG--DAIRGFRVSMVAMGGFGLAAVT 821

Query: 826 LETWESWGKFNDSSKTDLERFGYLLKAGATGAQGIIFYIQFFTLLGSGIGGPSIAAIS-A 884
           LE ++    F  ++KT  E+   ++K  +    G+      F L+G      + A ++ +
Sbjct: 822 LEIFDVADDFY-AAKTPEEKNVIIVKGISVFTMGV---GSTFQLMGGLSPASAFATVAMS 877

Query: 885 GWMLAGFAVIGIVYLIGVILTNVFKRSELEIWLSKSTWGKESAHWPVGKELTELEHLLHR 944
            W      +IG +YL   +  N FK+  +  WL K  W +   +        E E +   
Sbjct: 878 SWFSVALLIIGSIYLFTTMTLNYFKQDIVGWWLRKCCWSRTLDYRYAETAKGEHEEVRAL 937

Query: 945 PSLRLSQVTQRKAAQWM--------DSGSLQWQ----LELTLPDYLKGQTIGLQI 987
             ++LS     K+ +          D  S+  Q    +++ LP+ ++GQ++   I
Sbjct: 938 MEIQLSPQVHVKSTEHYENRYLGKGDHYSVAVQNGVGVQVHLPNLIRGQSVHFNI 992