Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., VgrG protein from Pseudomonas fluorescens FW300-N2E2

 Score =  308 bits (788), Expect = 7e-88
 Identities = 190/536 (35%), Positives = 280/536 (52%), Gaps = 34/536 (6%)

Query: 98  YQLTLVPALERLSLRHNSRIFQKQTVPEILSILLQEMGIHDYAFALKRDCVQREFCVQYR 157
           YQL L P L  LSL  N+R+FQ     +I++ + +  G  D+   L      RE+CVQY 
Sbjct: 91  YQLLLRPWLWWLSLASNNRVFQNLATSDIVTTIFKAHGFTDFQLKLTGSYTPREYCVQYS 150

Query: 158 ESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKLPEPIPYNALAGGTMDTPYI 217
           E+D+ F+ RL  EEG+ + F HE G HTL  +D++D+ + +P     N L G  +    +
Sbjct: 151 ETDLAFVSRLLEEEGIFWFFTHEEGTHTLVLADSNDAFAPIPNGPTVNYL-GQRIGEREL 209

Query: 218 HGLTYRT---QAEVSEVQLKDYSFKKPA---YSFLQTVQGTELDYQQTRYQHFDAPGRYK 271
           HG+       QA     Q  DY F  P    YS  + V G    Y+         PG Y 
Sbjct: 210 HGIRSGQVCLQAVAGVYQATDYEFTTPTTSLYSQAEAVAGPSSVYEH--------PGGYT 261

Query: 272 DDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAMNRDWVVVSINHQ 331
               G A ++ R+D LR       G+S+   L  GY F L  H D  +N DWVV S++H+
Sbjct: 262 AKAQGDALTKQRVDGLRSQEQRFVGESDCRWLVPGYWFTLAGHEDTTLNIDWVVTSVSHE 321

Query: 332 GEQPQALQEEGGSGATTYNNQFSLIPGHLHWRAEP-QPKPQVDGPMIATVVGPEGEEIFC 390
                           +Y N+F  IP    +R     PKP++     A VVG  GEEI+ 
Sbjct: 322 ASHD------------SYRNRFEAIPKATVYRPPRLTPKPRMY-TQTALVVGKAGEEIWT 368

Query: 391 DEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVSFLNGDPDQ 450
           DE+GR+K+ FPWDR    +E SSCWVRV   W+G  +G   +PRIG EVIV+F++GDPD+
Sbjct: 369 DEYGRIKLQFPWDRTGKNDETSSCWVRVVLPWSGKGFGMQFVPRIGQEVIVTFIDGDPDR 428

Query: 451 PIITGRTYHATNTPPYTLPEHKTKTVLRTETHQ-GEGFNELSFEDQAGKEQIYLHAQKDF 509
           P++TG  Y+  N  PY LP ++T++ ++T++ + G GFNEL FED+   E+++L AQKDF
Sbjct: 429 PLVTGCVYNGDNALPYALPANQTQSGIKTQSSKGGGGFNELRFEDKKDAEEVFLQAQKDF 488

Query: 510 DGLIENDHTTVIRHDQHLTVENDQFTQIKH-NQHLTVEGESR--TLVKLDCSSEIGGSLQ 566
           +  + ND T  + HD+ LTV+N +   +K  ++ +T+E   R  T+     S ++  +  
Sbjct: 489 NINVLNDTTATVGHDETLTVQNARTRTVKDGDETVTLEKGKRSVTIQTGSDSLDVKDTRT 548

Query: 567 QKIGSKAIYDAGTEVHLKAGNKLVLEAGNELTIKAGGSFIKVDAGGVHVVGSAINL 622
             +GS   +  G     K      L     LTIK  G+ + + +GG   + S  +L
Sbjct: 549 VTVGSDQTHSTGGNYEHKVTGNYSLTVDGNLTIKVSGT-LTLQSGGSFAIKSGADL 603



 Score = 35.4 bits (80), Expect = 9e-06
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 516 DHTTVIRHDQHLTVENDQFTQIKHNQHLTVEGESRTLVKLDC--SSEIGGSLQQKIGSKA 573
           D    I+    LT+++     IK    L V+  +    K     S++ G SL+ K G+  
Sbjct: 576 DGNLTIKVSGTLTLQSGGSFAIKSGADLAVQASTSISQKAGTALSNQAGTSLENKAGTTL 635

Query: 574 IYDAGTEVHLKAGNKLVLEAGNELTIKAG 602
             DAG  +  KA  +  ++ G  LTIK G
Sbjct: 636 TNDAGISLVNKAAAEQTVDGGGMLTIKGG 664