Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., VgrG protein from Pseudomonas fluorescens FW300-N2E2

 Score =  203 bits (517), Expect = 1e-56
 Identities = 143/465 (30%), Positives = 221/465 (47%), Gaps = 52/465 (11%)

Query: 6   YSIEVEGLEDETLVVRGFHGQESLSNSVFLGQACYGFRYQMQLASRVSNLTADQMVDKRA 65
           +S+ +EG E +  V+  F G+E++S           + + ++  S  S+L    + D  A
Sbjct: 10  FSLTIEGFEHDFQVL-AFTGKEAISRP---------YLFNVEFVSERSDLDLKSLFDVEA 59

Query: 66  ELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVPE 125
            L           +HG V   +    G   T Y+L LVP L  L  R N RI+Q+ +VP+
Sbjct: 60  FLTFDSKGN---GIHGRVYHIAHSSNGECLTRYRLALVPHLAYLRHRINQRIYQQFSVPK 116

Query: 126 ILSILLQEMGI--HDYAFALKRDCVQREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAGK 183
           I++++L+E GI    Y F L     +R++C QY E+D+ F+ RL  EEG+ + F H    
Sbjct: 117 IVALILEEHGILGDAYRFHLGATYPERDYCTQYDETDLHFIQRLCEEEGIHFHFQHSTQG 176

Query: 184 HTLYFSDASDSLSKLPEPIPYNALAGGTMDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAY 243
           H L F D       + +P  Y   +    D P I  +  R     S +  ++Y F+    
Sbjct: 177 HVLVFGDDQSVFPSIGQPTAYRHESDRVADEPLIKRINLRLGQLTSRISHRNYDFE---- 232

Query: 244 SFLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYL-RRHA--HTATGQSNE 300
                        QQ   +  D+  RY    +G    QIRL  + RRHA    A GQS++
Sbjct: 233 -------------QQLDIEKDDSSQRYTGHEHG---KQIRLRTMERRHAAYRQAEGQSDQ 276

Query: 301 PLLRAGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQALQEEGGSGATT--------YNNQ 352
             L +G+  ++  H     N  W++  + H+G QPQ L E    G T         Y N+
Sbjct: 277 TRLVSGHVLEISGHPRQEWNTLWLLTQVIHEGRQPQVLGENVARGNTLNEDDFHQGYRNR 336

Query: 353 FSLIPGHLHWRAE-PQPKPQVDGPMIATVVGPEGEEIFCDE-HGRVKIHFPWDRYSNGNE 410
           F ++P ++ +R      KPQV     A VV  EGE I  D   G++K+ FPWDR    ++
Sbjct: 337 FVVLPWNVSYRPPLAHKKPQVPSMQTAVVVASEGEGIQNDRCFGQIKVKFPWDREDRFDD 396

Query: 411 QSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVSFLNGDPDQPIITG 455
           +S CW++ +  W+      I  PR+G +V+V+FL  DPDQP++ G
Sbjct: 397 KSHCWLKGATDWSCE----IGPPRMGMKVVVTFLENDPDQPVVGG 437