Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 741 a.a., VgrG protein from Pseudomonas fluorescens FW300-N2E2

 Score =  323 bits (827), Expect = 2e-92
 Identities = 195/624 (31%), Positives = 312/624 (50%), Gaps = 12/624 (1%)

Query: 27  ESLSNSVFLGQACYGFRYQMQLASRVSNLTADQMVDKRAELKLYRNSQLVQRVHGIVRAF 86
           +S+  S  LG+    F Y++ L S    +T DQ++ K   L L       +  HGIV + 
Sbjct: 24  QSMEGSEELGRL---FHYELDLTSEDRAITFDQLLGKPMGLTLELYDGGKRYFHGIVCSC 80

Query: 87  SQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVPEILSILLQEMGIHDYAFALKRD 146
            Q         Y+++L P    L+   + RIFQ +TVP+I+  + +++G  D+  +L   
Sbjct: 81  RQLTGHGQFAGYRVSLRPWFWLLTRTSDCRIFQNKTVPDIIKQVFRDLGFSDFEDSLSGS 140

Query: 147 CVQREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKLP--EPIPY 204
             + E+CVQYRE+  DF+ RL  +EG+ Y F H+  +H L  +DA  + S     E +P+
Sbjct: 141 YREWEYCVQYRETSFDFVSRLMEQEGIYYYFRHDKSRHVLVLADAYGAHSTAADYESVPF 200

Query: 205 NALAGGTMDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTRYQHF 264
                   +  + +      + +   + L DY F +P  S L+        +    Y  +
Sbjct: 201 YPPDRQMRERDHFYDWQLAREVQPGSLALNDYDFLRPRAS-LEVRSSVPRTHTNADYPLY 259

Query: 265 DAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAMNRDWV 324
           D PG Y    +G  +++ R++ +         +     +  G+ F L  +     NR+++
Sbjct: 260 DYPGEYVQSNDGDHYARTRIEAIHSQFERVQLRGRARGIGCGHVFTLTGYDRADQNREYL 319

Query: 325 VVSINHQGEQPQALQEEGGSGATTYNNQFSLIPGHLHWRAEP-QPKPQVDGPMIATVVGP 383
           VV+  +Q  Q  A +      A  + ++   +  +  +R  P  P P V GP  A VVGP
Sbjct: 320 VVAARYQIRQ-DAYESGQSDVAEQFVSELDCMDANQAFRPLPLTPMPIVRGPQTAVVVGP 378

Query: 384 EGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVSF 443
            GEEI+ D++GRVK+HF WDR+   NE SSCW+RVSQ WAG  +G + +PRIG EVIVSF
Sbjct: 379 SGEEIWTDQYGRVKVHFHWDRHDQSNENSSCWIRVSQAWAGKNWGSVQLPRIGQEVIVSF 438

Query: 444 LNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTETHQG---EGFNELSFEDQAGKEQ 500
           L GDPD+PIITGR Y+A  T PY LP + T++ +++ + +G     FNE+  ED+ G EQ
Sbjct: 439 LEGDPDRPIITGRVYNAEQTVPYGLPANATQSGVKSRSSKGGSPANFNEIRMEDKKGAEQ 498

Query: 501 IYLHAQKDFDGLIENDHTTVIRHDQHLTVENDQFTQIKHNQHLTVEGESRTLVKLDCSSE 560
           +++HA+K+ D  +END T  + HD+  T++ND+   +KH++  TV+      + +D + +
Sbjct: 499 LFIHAEKNQDIEVENDETHWVGHDRRKTIDNDETVHVKHDRTETVDNNETITIGVDRTEK 558

Query: 561 IGGSLQQKIGSKAIYDAGTEVHLKAGNKLVLEAGNELTIKAGGSFIKVDAGGVHVVGSAI 620
           +G +    IG       G++  +  G       G+  TI  G    +   G    +  A 
Sbjct: 559 VGNNETISIGVNRTEKVGSDEKITIGANRTENVGSNETITIGADRTE-KVGANEKISIAS 617

Query: 621 NLNSGGSAGSGSGYGGKMAELPQG 644
           N           G  G   E  QG
Sbjct: 618 NRTEDVGGNETIGISGNRNETVQG 641



 Score = 30.0 bits (66), Expect = 4e-04
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 12/132 (9%)

Query: 493 EDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDQHLTVENDQFTQIKHNQHLTVEGESRTL 552
           ED  G E I         G+  N + TV + ++ + +  +Q TQI  N+   V     T 
Sbjct: 621 EDVGGNETI---------GISGNRNETV-QGNEGIEISGNQSTQIGQNESRDVAQNRTTN 670

Query: 553 VKLDCSSEIGGSLQQKIGSKAIYDAGTEVHLKAGNKLVLEAGNELTIKAGGSFIKVDAG- 611
           +K + S ++G       G       G        +  ++ +G  +TI   G+ IK+ A  
Sbjct: 671 IKQNDSLDVGKHFSLTAGDSISLTTGDASITMKKDGTIMISGKNITIDGSGA-IKIKASK 729

Query: 612 GVHVVGSAINLN 623
            V V G  I  N
Sbjct: 730 NVVVKGQKILQN 741



 Score = 29.6 bits (65), Expect = 5e-04
 Identities = 21/117 (17%), Positives = 49/117 (41%), Gaps = 7/117 (5%)

Query: 513 IENDHTTVIRHDQHLTVENDQFTQIKHNQHLTVEGESRTLVKLDCSSEIGGSLQQKIGSK 572
           I ++ T  +  ++ + +  ++   ++ N+ + + G   T +  + S ++  +    I   
Sbjct: 615 IASNRTEDVGGNETIGISGNRNETVQGNEGIEISGNQSTQIGQNESRDVAQNRTTNIKQN 674

Query: 573 AIYDAGTEVHLKAGNKLVLEAGN-------ELTIKAGGSFIKVDAGGVHVVGSAINL 622
              D G    L AG+ + L  G+       + TI   G  I +D  G   + ++ N+
Sbjct: 675 DSLDVGKHFSLTAGDSISLTTGDASITMKKDGTIMISGKNITIDGSGAIKIKASKNV 731