Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 685 a.a., type IV secretion protein Rhs from Pseudomonas fluorescens FW300-N2C3

 Score =  353 bits (907), Expect = e-101
 Identities = 225/688 (32%), Positives = 346/688 (50%), Gaps = 56/688 (8%)

Query: 18  LVVRGFHGQESLSNSVFLGQACYGFRYQMQLASRVSNLTADQMVDKRAELKLYRNSQLVQ 77
           L V  F G+E++S           +R+ ++L S   +L  ++++ ++A L+         
Sbjct: 21  LRVLEFKGKETISQP---------YRFDVELVSERCDLVLEELLHRQAFLRFDGRGG--- 68

Query: 78  RVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVPEILSILLQEMGIH 137
            VHG V + +QGD G   T YQ++LVP L  L  R N RIFQ  +VP+I++ +L+E G+ 
Sbjct: 69  GVHGQVYSVAQGDSGRRLTRYQVSLVPRLAYLRHRTNQRIFQHLSVPDIVARVLKEHGVL 128

Query: 138 D--YAFALKRDCVQREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSL 195
           +  + F L     +RE+CVQY ESD+ F+ R+ AE G+ Y F H    H L F D     
Sbjct: 129 EGAFQFILAGHYPEREYCVQYAESDLAFIERICAEVGIHYHFRHRPDGHLLVFGDDQTGF 188

Query: 196 SKLPEPIPYNALAGGTMDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELD 255
            +L E   Y A +G   D P I  L  R Q   + V L+DY F+KP    LQT     LD
Sbjct: 189 PRLAESTLYLADSGMAADAPAIKRLAVRLQTRATAVTLRDYDFRKPGL-LLQT----HLD 243

Query: 256 YQQT-RYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEH 314
            +Q    + +  PG + D  +G   ++  L+        A G S++    +G+   ++ H
Sbjct: 244 SRQLPALEDYRYPGGFCDRGDGKHLARRALERHGADHRVAQGNSDDSAFVSGHFMRIEGH 303

Query: 315 LDPAMNRDWVVVSINHQGEQPQALQEEGGSGATT---YNNQFSLIPGHLHWRAEPQP-KP 370
                N  W++  I+H G QPQ L+E   +G      Y N F   P  + +R    P KP
Sbjct: 304 PREQWNDLWLLTHIDHHGRQPQVLEETAAAGPDEFQGYRNTFLATPWEVFFRPPLHPEKP 363

Query: 371 QVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFI 430
           + DG   A V GP   EI CDE GRVK+   WDR    +E SSCW+RV+ GWA   YG +
Sbjct: 364 RADGYQSAVVTGPVDSEIHCDEFGRVKVQLAWDRDGQRDEHSSCWLRVASGWAHDHYGAV 423

Query: 431 AIPRIGHEVIVSFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTETHQ-GEGFNE 489
            IPR+G EV+V F++GD D+P++ G   +  N  P  LP  KT+++ R+++   G G+NE
Sbjct: 424 LIPRVGMEVLVGFIDGDVDKPLVVGCLPNGANPVPLDLPADKTRSIWRSQSSPGGAGYNE 483

Query: 490 LSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDQHLTVENDQFTQIKHNQHLTVEGES 549
           L  ED+ G E+IYL AQ+++   + +D    + H++ + V      ++K ++     G  
Sbjct: 484 LRIEDRKGAEEIYLRAQRNWTQHVLHDQRVQVDHERSIVVTGTARHELKADEQRVTHGRR 543

Query: 550 RTLVKLDCSSEIGGSLQQKIGSKAIYDAGTEVHLKAGNKLVLEAGNELTIKAGGSFIKVD 609
           +  V+ D    +GG    ++  + + +A  + H+ AG ++VLEAG  +T++AGG +I + 
Sbjct: 544 QAEVRQDDHLLVGGERHVRVTGQ-VLNASRQFHVSAGQQVVLEAGASVTLQAGGHWINIG 602

Query: 610 AGGVH-----VVGSAINLNSGGSAGSGSGYGGKMAELPQGVDKAKTPQEIELAAVTPTQQ 664
           A G+       VG A     G  AGS    G ++A                         
Sbjct: 603 ADGIFSSVPIEVGGAPMAVMGAEAGSPVSSGQQVA------------------------- 637

Query: 665 SMSPLLKARQIEALKGPAPVCEVCEEAK 692
           + +P L   QI + +G AP CE CE  +
Sbjct: 638 APAPRLSLAQILSFQGSAPFCEECERCR 665