Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., Rhs element Vgr protein from Pseudomonas stutzeri RCH2

 Score =  462 bits (1190), Expect = e-134
 Identities = 268/701 (38%), Positives = 398/701 (56%), Gaps = 43/701 (6%)

Query: 6   YSIEVEGLEDETLVVRGFHGQESLSNSVFLGQACYGFRYQMQLASRVSNLTADQMVDKRA 65
           +++ +EG+E +  V+    G+E++S           +R+ ++L S  S+L  + ++ + A
Sbjct: 10  FTLSLEGIEHDFKVLE-LQGREAISQP---------YRFDLELVSERSDLDLESLLHRPA 59

Query: 66  ELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVPE 125
            L L   + +   +HG+V   +QG+ G   T Y+LTLVP L  L+ R N RIFQ  TVP+
Sbjct: 60  FLAL---APVGSGIHGLVHQAAQGESGQRLTRYRLTLVPQLAYLAHRINQRIFQHLTVPQ 116

Query: 126 ILSILLQEMGIHDYAFALKRDCV---QREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAG 182
           I++ +L+E GI   A+  +   V    RE+CVQY E+D+ F+ RL  EEG+ Y F H A 
Sbjct: 117 IIAQVLEEHGIQADAYRFQLGPVIYPAREYCVQYDETDLHFIQRLCEEEGIHYHFQHGAS 176

Query: 183 KHTLYFSDASDSLSKLPEPIPYNALAGGTMDTPYIHGLTYRTQAEVSEVQLKDYSFKKPA 242
            H L F D     ++L     Y   +G   D P I     R +   S V  +DY F+KP 
Sbjct: 177 GHVLVFGDDQTVFARLAATA-YQQDSGLVADQPVIKRFGLRLETRPSHVTRRDYDFEKPR 235

Query: 243 YSFLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPL 302
            S          D+Q    + +D PGR+ +   G   SQ  L+  R     A G+S++P 
Sbjct: 236 LSMEAAFHS---DFQPD-LEDYDYPGRFTERARGKHLSQRALERHRHDYELAEGESDQPQ 291

Query: 303 LRAGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQALQEEGGSGATT-------YNNQFSL 355
           L +G+   L EH     N+ W++  + H+G+QPQ L+E   S + +       Y N F+ 
Sbjct: 292 LASGHFLPLGEHPRSDWNQLWLLTEVLHEGKQPQVLEESVTSDSQSRDGFTQGYRNHFTA 351

Query: 356 IPGHLHWR-AEPQPKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSC 414
            P  + +R A   PKP+V G   A V GP GEEI CDE+GRV++ F WDR    ++++SC
Sbjct: 352 TPWDIPFRPALRHPKPKVLGSQTAVVTGPAGEEIHCDEYGRVRVQFHWDREGQADDKTSC 411

Query: 415 WVRVSQGWAGSQYGFIAIPRIGHEVIVSFLNGDPDQPIITGRTYHATNTPPYTLPEHKTK 474
           W+RVS  WAG +YG IAIPR+G EV+V+FL GDPDQP++TG  YH  +  PY LP +KT+
Sbjct: 412 WLRVSSSWAGDRYGGIAIPRVGMEVLVTFLEGDPDQPLVTGCLYHKEHQVPYDLPANKTR 471

Query: 475 TVLRT-ETHQGEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDQHLTVENDQ 533
           TVL+T  +  G G+NEL  ED+ G+EQIY+HAQ+D+D  IE+D    + H++H TV+ + 
Sbjct: 472 TVLKTLSSPGGGGYNELRIEDRKGQEQIYIHAQRDWDENIEHDQKVRVGHERHDTVDANS 531

Query: 534 FTQIKHNQHLTVEGESRTLVKLDCSSEIGGSLQQKIGSKAIYDAGTEVHLKAGNKLVLEA 593
           +++ +  +H T   + +T ++ +    +G S Q KIG+    +AG E+HL +G K+VLEA
Sbjct: 532 YSEYRAEEHRTTHADRKTEIRANDHLTVGNSQQLKIGTGQFVEAGQEIHLSSGLKVVLEA 591

Query: 594 GNELTIKAGGSFIKVDAGGVHVVGSAINLNSGGSAGSGSGYGGKMAELPQGVDKAKTPQE 653
           G+ELT KAGGSFIK+DA G+ +VG  I +NSGGS G+GSG    +            P +
Sbjct: 592 GSELTFKAGGSFIKLDASGITMVGPLIRMNSGGSPGNGSGAAPIL------------PGQ 639

Query: 654 IELAAVTPTQQSMSPLLKARQIEALKGPAPVCEVCEEAKGN 694
           ++ A       S+  L+K   +        VCEVCE AK +
Sbjct: 640 VKAADADVPGISLEALVKQNML-FRSTRTGVCEVCEAAKAS 679