Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., type VI secretion system spike protein VgrG1a from Pseudomonas aeruginosa PA14

 Score =  343 bits (879), Expect = 2e-98
 Identities = 217/639 (33%), Positives = 336/639 (52%), Gaps = 39/639 (6%)

Query: 13  LEDETLVVRGFHGQESLSNSVFLGQACYGFRYQMQLASRVSNLTADQMVDKRAELKLYRN 72
           L  + L+++   G+E L            F Y++ L S   NL  +Q++ K   L L   
Sbjct: 16  LGPDVLLLQRMEGREELGRL---------FAYELHLVSENPNLPLEQLLGKPMSLSLELP 66

Query: 73  SQLVQRVHGIVRAFSQGDIGHHHTF--YQLTLVPALERLSLRHNSRIFQKQTVPEILSIL 130
               +  HGIV   SQ  +  H  F  YQ TL P    L+   + RIFQ Q+VPEI+  +
Sbjct: 67  GGSRRFFHGIVARCSQ--VAGHGQFAGYQATLRPWPWLLTRTSDCRIFQNQSVPEIIKQV 124

Query: 131 LQEMGIHDYAFALKRDCVQREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSD 190
            +++G  D+  AL R   + E+CVQYRE+  DF+ RL  +EG+ Y F HE  +H L  SD
Sbjct: 125 FRDLGFSDFEDALTRPYREWEYCVQYRETSFDFISRLMEQEGIYYWFRHEQKRHILVLSD 184

Query: 191 ASDSLSKLP---EPIPYNALAGGTMDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQ 247
           A  +  + P     +PY     G  +  +        + +   + L DY F++P  + L+
Sbjct: 185 AYGA-HRSPGGYASVPYYPPTLGHRERDHFFDWQMAREVQPGSLTLNDYDFQRPG-ARLE 242

Query: 248 TVQGTELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGY 307
                   +    Y  +D PG Y    +G  +++ R++ ++        +     + AG+
Sbjct: 243 VRSNIARPHAAADYPLYDYPGEYVQSQDGEQYARNRIEAIQAQHERVRLRGVVRGIGAGH 302

Query: 308 KFDLQEHLDPAMNRDWVVVSINHQGEQPQALQEEGGSGA-TTYNNQFSLIPGHLHWRAEP 366
            F L  +     NR+++VV   ++    Q L E G  GA + + ++   I     +R  P
Sbjct: 303 LFRLSGYPRDDQNREYLVVGAEYR--VVQELYETGSGGAGSQFESELDCIDASQSFRLLP 360

Query: 367 Q-PKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGS 425
           Q P P V GP  A VVGP+GEEI+ D++GRVK+HF WDR+   NE SSCW+RVSQ WAG 
Sbjct: 361 QTPVPVVRGPQTAVVVGPKGEEIWTDQYGRVKVHFHWDRHDQSNENSSCWIRVSQAWAGK 420

Query: 426 QYGFIAIPRIGHEVIVSFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTETHQG- 484
            +G + IPRIG EVIVSFL GDPD+PIITGR Y+A  T PY LP + T++ +++ + +G 
Sbjct: 421 NWGSMQIPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYELPANATQSGMKSRSSKGG 480

Query: 485 --EGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDQHLTVENDQFTQIKHNQH 542
               FNE+  ED+ G EQ+Y+HA+++ D L+END +  + HD++ ++ +D+  +I +N+ 
Sbjct: 481 TPANFNEIRMEDKKGAEQLYIHAERNQDNLVENDASLSVGHDRNKSIGHDELVRIGNNR- 539

Query: 543 LTVEGESRTLVKLDCSSEIGGSLQQKIGSKAIYDAGTEVHLKAGNKLVLEAGNELTIKAG 602
                     VKL+ +  +GG+    +    + +AG ++ L  G K V+E   + TI   
Sbjct: 540 -------TRAVKLNDTLLVGGAKSDSVTGTYLIEAGAQIRLVCG-KSVVEFNADGTINIS 591

Query: 603 GSFIKVDAGGVHVV--GSAINLNSGGSA---GSGSGYGG 636
           GS   + A G   +  G  ++LNSGG++     G G  G
Sbjct: 592 GSAFNLYASGNGNIDTGGRLDLNSGGASEVDAKGKGVQG 630