Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 842 a.a., hypothetical protein from Pseudomonas aeruginosa PA14

 Score =  368 bits (944), Expect = e-106
 Identities = 228/635 (35%), Positives = 329/635 (51%), Gaps = 38/635 (5%)

Query: 39  CYGFRYQMQLASRVSNLTADQMVDKRAELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFY 98
           C  FR  ++L S  + +   Q++D+     L+++ +  + VHGIV  F+QG  G   T Y
Sbjct: 31  CEPFRLNLKLVSDKNAIDFKQVLDQPGTFTLWQDGRPARYVHGIVSHFTQGSSGFRRTRY 90

Query: 99  QLTLVPALERLSLRHNSRIFQKQTVPEILSILLQEMGIHDYAFALKRDCVQREFCVQYRE 158
           +L L P L RL L  N RIFQ+++VPEIL  LL+E  + DY   +  + + RE+CVQ  +
Sbjct: 91  ELLLEPQLARLELCCNWRIFQEKSVPEILQALLKEHRVLDYEQRIYHEHLPREYCVQAGD 150

Query: 159 SDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKLPE-PIPYNALAGGTMDTPYI 217
           SD     RLA EEGLVY F  +  +HTL  SD      ++   P+ ++A   G    P +
Sbjct: 151 SDHYLHDRLAFEEGLVYYFRFDEHRHTLVCSDRLYVQERIAGGPVLFSAQPEGDNPQPVL 210

Query: 218 HGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGA 277
           H   Y      +    +DYSFK+P Y     + G  L++Q + Y+ +D PGRYK    G 
Sbjct: 211 HSFRYSENVRTARQTQRDYSFKRPTYDQEHHLAGEALEHQGSSYERYDYPGRYKQSGAGR 270

Query: 278 AFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQA 337
            FS+ RL   RR A  A+   ++P L  G+ F L+ H     N  W  V + H+G Q   
Sbjct: 271 PFSESRLRGHRRDARVASVSGDDPRLIPGHAFALEGHPRADFNAWWRPVRVVHRGTQYAG 330

Query: 338 LQEEGGSG--ATTYNNQFSLIPGHLHWRAEPQPKPQVDGPMIATVVGPEGEEIFCDEHGR 395
            +EE        +Y+ +  L+P  + WR  P P+P++DGP IATVVGP GEEI CDE GR
Sbjct: 331 QEEESADAPLGVSYDLRAELVPEDVEWRPAPLPRPRIDGPQIATVVGPAGEEIHCDEWGR 390

Query: 396 VKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVSFLNGDPDQPIITG 455
           VK+ FPWDR    +E S+CW+RV+Q WAG+ +G +AIPRIG EVIV +L+GD DQPI+TG
Sbjct: 391 VKVQFPWDREGRHDEFSTCWIRVAQNWAGADWGHMAIPRIGQEVIVDYLDGDCDQPIVTG 450

Query: 456 RTYHATNTPPYTLPEHKTKTVLRTETHQGEGFNELSFEDQAGKEQIYLHAQKDFDGLIEN 515
           RTY ATN PPY LP+HK  + ++++ ++G   NEL  +D   +              + +
Sbjct: 451 RTYRATNRPPYALPDHKILSTIKSKEYKGSRANELRIDDTTAQ----------ISAALMS 500

Query: 516 DHTTVIRHDQHLT-------VENDQFTQIKHNQHLTVEGESRTLVKLDCSSEIGGSLQQK 568
           DH     H  +LT           +  +++ ++H  V      L+  +         +Q 
Sbjct: 501 DHGASALHLGYLTHPRPEGGKPRGEGFELRTDEHGAVRAAKGLLLSTE---------EQL 551

Query: 569 IGSKAIYDAGTEVH-LKAGNKLVLEAGNELTIKAGGSFIKVDAGGVHVVGSAI-NLNSGG 626
                  D G  V  L+A  +L  E G+      G   +  DA     +  A+ +L  G 
Sbjct: 552 RAGAGHLDRGVVVQVLEAALELARELGDYAGEHQG---VGHDAAPQQTLQEAVRDLGHGA 608

Query: 627 SAGSGSGYGGKMA---ELPQGVDKAKTPQEIELAA 658
           +  SG   GGK A     P G+  A TP  + LAA
Sbjct: 609 NDESGKSNGGKPAIALSGPAGI-AAATPASLTLAA 642