Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 848 a.a., hypothetical protein from Burkholderia phytofirmans PsJN

 Score =  144 bits (363), Expect = 2e-38
 Identities = 128/496 (25%), Positives = 215/496 (43%), Gaps = 33/496 (6%)

Query: 98  YQLTLVPALERLSLRHNSRIFQKQTVPEILSILLQEMGIHDYAFALK---RDCVQREFCV 154
           ++  L P + R +L  +SRIF    +  +  +L   +G  ++        +    R+   
Sbjct: 138 FEFVLRPFVWRATLNCDSRIFHGTVIEVLEEVLQPYVGTVEWRIGGMWPGKGYPPRDMIR 197

Query: 155 QYRESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKLPEPIPYNAL---AGGT 211
           Q  E D  F   L  E GL Y F H    H+L  SD        P  + Y  L    G  
Sbjct: 198 QAWEPDWQFASFLMEEFGLFYWFEHRDDFHSLVISDLLSGFR--PHGVAYETLRYHTGSR 255

Query: 212 MDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYS--------FLQTVQGT-ELDYQQTRYQ 262
           +D  +I  L+        +  + D+++ +P  +          +  +GT   D +     
Sbjct: 256 IDEEHISELSIAYTLTPGKATVNDHNYAEPRLAKSLVPNRETCEDTRGTASRDIEIYEPA 315

Query: 263 HFDAPG--RYKDDVN-----GAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHL 315
            F  P   R   D N     G   ++++L   R  +  ATG+     L+ G  F L  + 
Sbjct: 316 DFAQPEARRTAADANDERGEGQHLARVKLQSRRCQSLRATGRGRLQALQPGRTFTLAGYP 375

Query: 316 DPAMNRDWVVVSINHQGEQPQALQEEGGSGATTYNNQFSLIPGHLHWRAEPQ--PKPQVD 373
               N +++V+S +   +  +     G +   T N +F L P + ++R  PQ  P+P++D
Sbjct: 376 QERANCEYIVLSCDL--DMTEVGTSSGPTRQYTVNTEFELQPANEYFRL-PQVTPRPRID 432

Query: 374 GPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIP 433
           G   A VV P+ +E++ D   R++I F WDR +N +  +S WVRV   W G + G +A  
Sbjct: 433 GYEYAVVVAPQDKEMYIDYRNRLRIQFDWDRQANLDGATSIWVRVMTQWQGGELGVVAPG 492

Query: 434 RIGHEVIVSFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTET-HQGEGFNELSF 492
           R G  V+VS ++GDPD+P++ G      N PP+ LP +   + +R+++   G   N L+ 
Sbjct: 493 RAGQMVLVSHVHGDPDRPVVAGFVVDKFNMPPWELPANAALSGMRSKSLGYGLRSNHLAL 552

Query: 493 EDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDQHLTVENDQFTQIKHNQHLTVEGESRTL 552
           +D  GK Q  L + +     +   +T  I   +  T    +  +I  + HL   G    L
Sbjct: 553 DDTPGKMQAQLASDQANSRFVAGFNTR-IDGTKGRTEARGEGIEIATDAHLVGRGNQGVL 611

Query: 553 VKLDCSSEIGGSLQQK 568
             L   + +G S   K
Sbjct: 612 --LTSEARVGASAPVK 625



 Score = 30.0 bits (66), Expect = 5e-04
 Identities = 11/26 (42%), Positives = 19/26 (73%)

Query: 588 KLVLEAGNELTIKAGGSFIKVDAGGV 613
           ++VL A  E+ + AGGS+I++D  G+
Sbjct: 784 RIVLTAAKEIWLGAGGSYIQIDGSGI 809