Pairwise Alignments

Query, 172 a.a., type VI secretion system tube protein Hcp from Vibrio cholerae E7946 ATCC 55056

Subject, 166 a.a., type VI secretion system protein from Pseudomonas fluorescens FW300-N2E3

 Score = 99.4 bits (246), Expect = 3e-26
 Identities = 56/161 (34%), Positives = 86/161 (53%), Gaps = 5/161 (3%)

Query: 6   YISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHVVTVPTDPQSGQPSGQRVH 65
           Y+SI G+ QGLI+AG     SIG+     HEDE+++  + H +    D   G   G+  H
Sbjct: 6   YMSITGKRQGLISAGCSGLSSIGNKCQTDHEDEIMILAYSHNMITGND--GGGSGGRGKH 63

Query: 66  KPFKFTVALNKAVPLLYNALSSGEKLKTVELKWYRTSIEGKQENFFTTKLENASIVDIHC 125
            P   T  ++K+ PLL +AL   E+++   + +YRTS  G Q+ +++ +L  A I  I  
Sbjct: 64  LPIMITKNIDKSSPLLASALHEREEVECT-IHFYRTSPAGGQDKYYSIRLTGAKIAHITL 122

Query: 126 EMPHCQDPAKSDFTQNVTVSLSYRKITWDHVNAGTSGSDDW 166
           ++PH     +SD      VS+ YR I+W H+ AGT     W
Sbjct: 123 QVPH--STYRSDAQPQELVSIRYRDISWTHIQAGTCAYSTW 161