Pairwise Alignments

Query, 172 a.a., type VI secretion system tube protein Hcp from Vibrio cholerae E7946 ATCC 55056

Subject, 159 a.a., type VI secretion system tube protein Hcp from Rahnella sp. WP5

 Score = 84.3 bits (207), Expect = 9e-22
 Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 4/157 (2%)

Query: 16  LITAGACTADSIGDSFVEGHEDEMLVQQFDHVVTVPTDPQSGQPSGQRVHKPFKFTVALN 75
           L   G   +  +G S V G E  + ++   H + +P D  +G+ +G R+H P       +
Sbjct: 7   LFLTGVDGSPIVGGSLVSGREGAIELKSVTHNMHIPADRNTGKLTGTRIHSPITLQKEFD 66

Query: 76  KAVPLLYNALSSGEKLKTVELKWYRTSIEGKQENFFTTKLENASIVDIHCEMPHCQDPAK 135
           +  PLLY ALS G+ LK+  +K Y     G +  +F   LEN  +  I   +     P  
Sbjct: 67  RTTPLLYRALSEGQTLKSATIKMYHILEAGIEAEYFNIILENVKVTSIAPNL----YPGN 122

Query: 136 SDFTQNVTVSLSYRKITWDHVNAGTSGSDDWRKPIEA 172
              T   T+ L Y  ITW +VN      D W + I A
Sbjct: 123 QTGTHFETIQLRYESITWKYVNGNIIYKDIWNERITA 159