Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  275 bits (703), Expect = 3e-78
 Identities = 179/557 (32%), Positives = 298/557 (53%), Gaps = 23/557 (4%)

Query: 2   SLTIRQRLYIL---SLVPLLTIALSMMYFTFSETRLLSQEQMRNTREAMMEMKQAELKSY 58
           S++I +RL+++   S+V L T+   M+    S+   L Q +++ T+  +     + + +Y
Sbjct: 6   SVSISRRLWLILVVSIVMLFTLGALMLKQIHSD---LYQAKVQKTQHVVQTA--SGVLTY 60

Query: 59  LQIADTALAPLKARQAPLDDAIAILREIQFGQSGYIFGYDSKGTRLLLGKATNGLGDNFM 118
            Q  + A      R A    A++ +R +++ Q+ Y +  D     ++        G N  
Sbjct: 61  YQGLEAA--GTLTRDAAQKQALSAVRGLRYNQTDYFWINDLTPVMIMHPTNPKLEGQNLS 118

Query: 119 NMQDTQGNYLIQDLLKNAKLNQ--FTTYYFPKPGEQTPLPKLSYSVYLPQWDLTIGTGFY 176
            ++D  G  L  +++  AK        Y +PKPG + P+ K SY      W   IG+G Y
Sbjct: 119 AIRDPNGYALFNEMVAIAKSKGAGMINYLWPKPGAEAPVGKTSYVQLFEPWGWIIGSGVY 178

Query: 177 TDDVDAEIAEMEARAEEQLEQGLYTLAGITLLIVILVSVMAIMINRSIMRPLELFDNSIS 236
            DDV AE      +A             + L+I +L+ ++  +I RSI+ PL+   N+++
Sbjct: 179 VDDVQAEFQSQVIKASV-----------VGLVITLLMGLLLTLIVRSIVGPLQETVNAMA 227

Query: 237 SFASGDADLTARMEKFSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAMSQRA 296
           + ASG++DLT  ++     E  +L+ +FN F   L+ ++ ++      + + ++ +   A
Sbjct: 228 NIASGESDLTRTLDTHGQDEVTQLARHFNAFTAKLRQVVTQLQASASALGQSSSELGNDA 287

Query: 297 TQVDHLASNQREETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNAAA 356
            Q    +  Q ++ E VATA+ E+T   Q+++ NA +AA   +DAE  A      ++ + 
Sbjct: 288 AQAQERSQQQSQQMELVATAINEVTYGVQDVAKNAEHAANEMRDAESQAQQGQVNIDGSL 347

Query: 357 RSVQALAEEVADASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQGR 416
           + +  L++ +  A  VI  L  +   I S L VI+ IAEQTNLLALNAAIEAARAGEQGR
Sbjct: 348 QQIDRLSQTIDQAVEVIRTLASESTQIGSVLEVIRSIAEQTNLLALNAAIEAARAGEQGR 407

Query: 417 GFAVVADEVRKLASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAAAE 476
           GFAVVADEVR LA RTQ+ST +I  MI++L+  S+AAVK +  S + S  T+ +A  A  
Sbjct: 408 GFAVVADEVRLLAQRTQKSTAEIQAMIERLQTHSEAAVKVIGDSSRASQLTIEQAGLAGA 467

Query: 477 ALQKIQASIGTIMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGSQT 536
           +L  I  ++  +  +NA IA+AT +Q+ V ++I+Q +   +  S  +A  A Q+ Q S  
Sbjct: 468 SLNAIGQALRNLNSLNASIASATLQQAHVVEDINQNVTQAAGLSHSTAMAAEQSSQASTR 527

Query: 537 LNGRAHELYELVARFKV 553
           L   + +L  L+ +F+V
Sbjct: 528 LKALSEQLNGLLTQFRV 544