Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  372 bits (956), Expect = e-107
 Identities = 202/559 (36%), Positives = 341/559 (61%), Gaps = 6/559 (1%)

Query: 1   MSLTIRQRLYILSLVPLLTIALSMMYFTFSETRLLSQEQMRNTREAMMEMKQAELKSYLQ 60
           M L+++ ++  L+++P+L  A+ +   T    +  + ++++ TRE ++   +A L++Y+ 
Sbjct: 1   MRLSLKAKVLSLAILPVLLSAVIISLTTAFILKEQASKEVQQTRERLLSEAKATLQNYVA 60

Query: 61  IADTALAPLKARQAPLDD-----AIAILREIQFGQSGYIFGYDSKGTRLLLGKATNGLGD 115
           +  TA+ PL     P D+     AI +L  I +G+ GY FGYDS+  RL    + +G+G 
Sbjct: 61  VGLTAIKPLYDAATPGDNEARAQAIKLLSNISYGKDGYFFGYDSETIRLFKANSPDGVGK 120

Query: 116 NFMNMQDTQGNYLIQDLLKNAKLN-QFTTYYFPKPGEQTPLPKLSYSVYLPQWDLTIGTG 174
           +F + +D  G Y+ +DL+K AK    +  Y  P PG Q  +PKL Y+ YL +WDL +G+ 
Sbjct: 121 SFKDNRDPNGVYVNRDLVKVAKDGTHYLEYSSPLPGSQDLVPKLGYTEYLSKWDLAVGSS 180

Query: 175 FYTDDVDAEIAEMEARAEEQLEQGLYTLAGITLLIVILVSVMAIMINRSIMRPLELFDNS 234
              D ++A++A +EA+  ++++  + ++ GI  +++++++V+ +++  +I+RPL L  ++
Sbjct: 181 VNLDGIEAQVALVEAKVHDRVQGVILSIVGIAAVVLLVIAVVGLLLANAILRPLHLMKDN 240

Query: 235 ISSFASGDADLTARMEKFSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAMSQ 294
           +   A+G+ DLT R+   S  E  +L+ +FNRFV+ +  +++++  +  Q+      +S+
Sbjct: 241 LDDIAAGEGDLTRRLTITSQDELGQLAGSFNRFVDKIHGLVRQITDMTSQLTGLVTQVSE 300

Query: 295 RATQVDHLASNQREETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNA 354
           +A + +     QR ET+QVATA+ EM++ AQE++ +A  AA +A+  ++       +V  
Sbjct: 301 QAQRSEQAMERQRHETDQVATAINEMSSAAQEVARSAQGAAVAAQQTDEEGQSAKRVVAG 360

Query: 355 AARSVQALAEEVADASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQ 414
           + + + AL  ++  +   +  L+ DV +I S L VI+ IAEQTNLLALNAAIEAARAGE 
Sbjct: 361 SIQQIHALVNDIRSSGVSLDSLQQDVASIVSVLGVIRSIAEQTNLLALNAAIEAARAGEA 420

Query: 415 GRGFAVVADEVRKLASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAA 474
           GRGFAVVADEVR LASRTQ+STQ+I  MI +L++G+ AAV+AM  S +    T   AN A
Sbjct: 421 GRGFAVVADEVRALASRTQQSTQEIQGMIDRLQSGTHAAVEAMRRSSEAGDGTSERANEA 480

Query: 475 AEALQKIQASIGTIMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGS 534
             +L  +   IGTI  MNA IA+A EEQ+ V +EI++ +  I+      AD      Q S
Sbjct: 481 GASLDTMAQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVADETQLGAQTS 540

Query: 535 QTLNGRAHELYELVARFKV 553
           ++L      L +LV +F++
Sbjct: 541 RSLADLGQRLGKLVGQFRI 559