Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., chemotaxis protein from Pseudomonas fluorescens FW300-N2E3

 Score =  273 bits (698), Expect = 1e-77
 Identities = 179/557 (32%), Positives = 302/557 (54%), Gaps = 23/557 (4%)

Query: 2   SLTIRQRLYILSLVP---LLTIALSMMYFTFSETRLLSQEQMRNTREAMMEMKQAELKSY 58
           S++I +RL+++ +V    LLT+ + M+     +   L Q + + T+  +++     L  Y
Sbjct: 6   SVSISRRLWLILIVAVLMLLTLGVLMLKQIHDD---LYQAKAQKTQH-VVQTASGILAYY 61

Query: 59  LQIADTALAPLKARQAPLDDAIAILREIQFGQSGYIFGYDSKGTRLLLGKATNGLGDNFM 118
             +  T       R+A    A++++R +++ Q+ Y +  D     ++        G N  
Sbjct: 62  HDLETTGTL---TREAAQKQALSVVRGLRYDQNDYFWINDLTPVMVMHPTNPKLEGQNLS 118

Query: 119 NMQDTQGNYLIQDLLKNAKLNQ--FTTYYFPKPGEQTPLPKLSYSVYLPQWDLTIGTGFY 176
            ++D  G  L  +++  AK        Y +PKPG  TP+ K SY      W   IG+G Y
Sbjct: 119 TIKDPDGFALFNEMVVIAKAKGAGMVDYRWPKPGASTPVQKTSYVKLFEPWGWVIGSGVY 178

Query: 177 TDDVDAEIAEMEARAEEQLEQGLYTLAGITLLIVILVSVMAIMINRSIMRPLELFDNSIS 236
            DD+ AE               ++  + + L I +L++++ I+I RSI+RPL+   N+++
Sbjct: 179 IDDMQAEFYAQ-----------MWQTSLVGLAIAVLMALLVILIARSIVRPLQETVNAMA 227

Query: 237 SFASGDADLTARMEKFSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAMSQRA 296
           + ASG++DLT  ++     E  +L+ +FN F E L+ +I ++      + + ++ +   A
Sbjct: 228 NIASGESDLTRSLDTHGQDEVTELAQHFNAFTEKLRRVITQLQLSASALGQSSSDLGNDA 287

Query: 297 TQVDHLASNQREETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNAAA 356
            Q    +  Q ++ E VATA+ E+T   Q+++ NA +AA   +DA+  A      ++ + 
Sbjct: 288 AQAQVRSQQQSQQMELVATAINEVTYGVQDVARNAEHAASEMRDAQAQAQQGQVNIDGSL 347

Query: 357 RSVQALAEEVADASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQGR 416
           + +  L+  +  A  VI  L  +   I S L VI+ IAEQTNLLALNAAIEAARAGEQGR
Sbjct: 348 QQIDQLSSTIDQAVEVIRTLATESTQIGSVLEVIRSIAEQTNLLALNAAIEAARAGEQGR 407

Query: 417 GFAVVADEVRKLASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAAAE 476
           GFAVVADEVR LA RTQ+ST +I +MI++L++ S+AAVK +  S + S  T+ +A  A  
Sbjct: 408 GFAVVADEVRLLAQRTQKSTAEIQSMIERLQSHSEAAVKVIGDSSRASQLTIEQAGLAGA 467

Query: 477 ALQKIQASIGTIMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGSQT 536
           +L  I  ++  +  +NA IA+AT +Q+ V ++I+Q +   +  S  +A  A Q+   S  
Sbjct: 468 SLNAIGQALNNLNGLNASIASATLQQAHVVEDINQNVTQAAGLSHSTALAAEQSSVASVH 527

Query: 537 LNGRAHELYELVARFKV 553
           L   + +L  L+ +F+V
Sbjct: 528 LKELSEQLNGLLKQFRV 544