Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 561 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  367 bits (942), Expect = e-106
 Identities = 205/558 (36%), Positives = 330/558 (59%), Gaps = 6/558 (1%)

Query: 2   SLTIRQRLYILSLVPLLTIALSMMYFTFSETRLLSQEQMRNTREAMMEMKQAELKSYLQI 61
           SL +R +L +L+L P+L +A+ +   +  + + L+ +Q   TR +++  ++AELK Y+++
Sbjct: 4   SLRLRAKLLLLALGPILLLAVVLSGVSVVQLKDLADQQEAQTRASLIRDRRAELKHYVEL 63

Query: 62  ADTALAPLKARQAPLD-----DAIAILREIQFGQSGYIFGYDSKGTRLLLGKATNGLGDN 116
           A  A+ P+  R A  D      A+AI   + +G  GY +GYD +  R+  G     +G++
Sbjct: 64  AKNAIGPIYERSAEGDMQARSQAVAIFERLSYGSEGYFWGYDGQSRRVFQGATRERIGES 123

Query: 117 FMNMQDTQGNYLIQDLLKNAK-LNQFTTYYFPKPGEQTPLPKLSYSVYLPQWDLTIGTGF 175
           F + +D  G + I++L+K  +  + +  Y F  PG    +PK+ Y+ YLP+W+L  GT  
Sbjct: 124 FADYRDPNGVFAIRELVKAGQDSSHYVDYSFAVPGSNALVPKVGYAEYLPKWNLVFGTSL 183

Query: 176 YTDDVDAEIAEMEARAEEQLEQGLYTLAGITLLIVILVSVMAIMINRSIMRPLELFDNSI 235
             DDV+ ++ E  A  + +++     + G  LL++IL++ +A++++ +I+RPL     ++
Sbjct: 184 NLDDVERDVVEARAVFQARIDSLTLIMLGSALLLLILMAGLAVLMSNAILRPLLQIKQNL 243

Query: 236 SSFASGDADLTARMEKFSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAMSQR 295
              A GD DLT R+   S  E  +LS +FNRFVE +  ++++V     Q+     A++ +
Sbjct: 244 DDMAQGDGDLTHRLPITSRDELGELSTSFNRFVEKIHALVRQVAGTTTQLSGLVGAVASQ 303

Query: 296 ATQVDHLASNQREETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNAA 355
           A + +   ++QR ET+QVATA+ EM+  A E++ +A  AA++A++ +        +V+ +
Sbjct: 304 AQRSEQAMADQRSETDQVATAINEMSAAAHEVAMSAQRAAEAARETDQQGVAAKQVVDQS 363

Query: 356 ARSVQALAEEVADASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQG 415
            R +  L  E+  +   +  L+ DV  I   L VI+ IAEQTNLLALNAAIEAARAGE G
Sbjct: 364 IRQIHELVGELRGSGESLEGLQQDVKGIVGVLDVIRAIAEQTNLLALNAAIEAARAGEAG 423

Query: 416 RGFAVVADEVRKLASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAAA 475
           RGFAVVADEVR LASRTQ+ST +I  MI +L+  +   V  M  + ++  +T   AN A 
Sbjct: 424 RGFAVVADEVRALASRTQQSTGEIQGMIDRLQNATSHTVGTMLRAGEKGESTRNHANQAG 483

Query: 476 EALQKIQASIGTIMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGSQ 535
           E+L  I A IGTI  MNA IA A EEQ+ V +EI++ +  I+D     A  A Q  Q ++
Sbjct: 484 ESLDAISALIGTINSMNAQIAAAAEEQTAVAEEINRSVHHIADAVDGVASDAAQGAQTAR 543

Query: 536 TLNGRAHELYELVARFKV 553
            LNG A +L  LV +F++
Sbjct: 544 ELNGLAEQLQRLVGQFRI 561