Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  283 bits (725), Expect = 9e-81
 Identities = 187/565 (33%), Positives = 297/565 (52%), Gaps = 39/565 (6%)

Query: 2   SLTIRQRLYILSLVPLLTIALSMMYFTFSETRLLSQEQMRNTREAMMEMKQAELKSYLQI 61
           SL+I +RL+++ +V +L      M F  S T L         R+   ++ QA+ +  + +
Sbjct: 5   SLSISRRLWLILVVSVL------MLFVLSATLL---------RQLHNDLYQAKAEKTMHV 49

Query: 62  ADTALAPLK-----------ARQAPLDDAIAILREIQFGQSGYIFGYDSKGTRLLLGKAT 110
             TA   L             R+A    A+  ++ +++ QS Y +  D +   ++     
Sbjct: 50  VQTASGILSFYQGLEAAGGMTREAAQQQALKEIKSLRYSQSDYFWINDLRPVMIMHPTNA 109

Query: 111 NGLGDNFMNMQDTQGNYLIQDLLKNAKLNQ--FTTYYFPKPGEQTPLPKLSYSVYLPQWD 168
              G +   ++D  G  +  +++   K        Y +PKPG   P+ K SY      W 
Sbjct: 110 KLEGQDLSTIKDPDGFAVFNEMVTLVKAQGAGMVNYRWPKPGASEPVKKTSYVQLFQPWG 169

Query: 169 LTIGTGFYTDDVDAEIAEMEARAEEQLEQGLYTLAGITLLIVILVSVMAIMINRSIMRPL 228
             +G+G Y DDV AE        + QL      +AGI L++V+L+    + I RSI+RPL
Sbjct: 170 WILGSGVYVDDVAAEF-------KTQLWNAGMFIAGIVLIMVLLL----VTIVRSIVRPL 218

Query: 229 ELFDNSISSFASGDADLTARMEKFSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEE 288
                +++S ASG++DLT  +E     E  +L  +FN FV  L+N++ ++      + + 
Sbjct: 219 RAAVGAMASIASGESDLTRTLETHGNDEITELGTHFNAFVAKLRNVVGQLQHSAVALGQA 278

Query: 289 TNAMSQRATQVDHLASNQREETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDV 348
           +  +   A Q    +  Q ++ + VATA+ E+T   Q+++ NA +AA   +DAE  A   
Sbjct: 279 STDLGSDAEQAQSRSEQQSQQMDLVATAVNEVTYGVQDVAKNAEHAASEMRDAESQAQQG 338

Query: 349 HNIVNAAARSVQALAEEVADASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEA 408
              ++ + R ++ L+  +  A  V+  L  +   I S L VI  IAEQTNLLALNAAIEA
Sbjct: 339 QINIDNSLRQIEHLSSTIGQAVQVMQSLASESTQIGSVLEVISSIAEQTNLLALNAAIEA 398

Query: 409 ARAGEQGRGFAVVADEVRKLASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTV 468
           ARAGEQGRGFAVVADEVR LA RTQ+ST +I +MI++L+  SDAAVK +  S + S  T+
Sbjct: 399 ARAGEQGRGFAVVADEVRLLAQRTQKSTAEIQSMIERLQKHSDAAVKVIGDSSRSSQLTI 458

Query: 469 REANAAAEALQKIQASIGTIMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLAN 528
            +AN A ++L  I  ++  +  +NA IA+AT +Q+ V  +I+Q +   +  S  +A  A 
Sbjct: 459 EQANQAGQSLTSISQALRNLNSLNASIASATLQQTHVVDDINQNVTQAAQLSQSTALAAE 518

Query: 529 QNRQGSQTLNGRAHELYELVARFKV 553
           Q+   S  L G + EL  L+ +F+V
Sbjct: 519 QSTSASLHLRGLSEELNTLLKQFRV 543