Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  267 bits (683), Expect = 7e-76
 Identities = 181/559 (32%), Positives = 300/559 (53%), Gaps = 33/559 (5%)

Query: 5   IRQRLYILSLVPLLTIALSMMYFTFSETRLLSQEQMRNTREAMMEMKQAELKSYLQIADT 64
           I +R++++ L   L++  +++ F F+         +RN    +++ K+A L +   IA +
Sbjct: 19  ISRRIWVMLL---LSLVATLLMFVFA---------LRNMDTVLVQEKEARLNALTDIAIS 66

Query: 65  ALAPL--KARQAPLDDA------IAILREIQFGQSGYIFGYDSKGTRLLLGKATNGLGDN 116
            +     KA+   L +A      ++ L  +++    Y F  D +G  +    A   +  N
Sbjct: 67  IITDFQGKAQSGELSEADAKAKALSALDNLRYSGKEYYFTIDRQGMMIQHPFAKKLVDTN 126

Query: 117 FMNMQDTQGNYLIQDLLKNAKLNQ--FTTYYFPKPGEQTPLPKLSYSVYLPQWDLTIGTG 174
            + M D  G  L  ++++  + +      Y + +P    P PK+S      +W   +GTG
Sbjct: 127 VLGMADPNGVKLFAEMIRLTQNSDSALVNYMWNQPDADAPSPKMSVVKRFSEWGWIVGTG 186

Query: 175 FYTDDVDAEIAEMEARAEEQLEQGLYTLAGITLLIVILVSVMAIMINRSIMRPLELFDNS 234
            Y DD+ A+  E   +         Y L  + LL+   V  + +MI+RS+  PL+    +
Sbjct: 187 IYVDDIAAQKQEFTWQ---------YLL--VFLLVWGPVMALLLMISRSVTEPLQRTLMA 235

Query: 235 ISSFASGDADLTARMEKFSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAMSQ 294
             + A G+A+LT R+E+    E  ++S  FN FV  +Q+++  V        + ++++S 
Sbjct: 236 FKNIAEGEANLTLRLEERGRDELSQVSVYFNAFVGRIQSLVISVRDSVDHSRQLSSSLSN 295

Query: 295 RATQVDHLASNQREETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNA 354
            A Q  H  ++ ++ET+ VA A+ +M+ TA E++ NA  AA+SAK+A+  A   + +V  
Sbjct: 296 VAHQAAHATNSMQQETQSVAAAINQMSATASEVAANAQLAAKSAKNADSQADSTNLVVTH 355

Query: 355 AARSVQALAEEVADASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQ 414
           A  +V+ L+ E+ + S +   L+     I   L VI  IAEQTNLLALNAAIEAARAGE 
Sbjct: 356 AMGNVRQLSSELEETSEIAKALKVSSGEIGQILDVIVGIAEQTNLLALNAAIEAARAGEA 415

Query: 415 GRGFAVVADEVRKLASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAA 474
           GRGFAVVADEVR LASRTQ+STQ+I+ +I+ ++   D    ++  ++Q+S  TV E    
Sbjct: 416 GRGFAVVADEVRTLASRTQQSTQEINAIIEAIRGAVDKVNASVARARQQSDNTVDETAQV 475

Query: 475 AEALQKIQASIGTIMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGS 534
            +AL  I+ +IG I DMN  IATAT+EQS V  E+++ I  I++ S E+   +      S
Sbjct: 476 MDALGLIKQAIGQINDMNLQIATATDEQSAVIAELNENINRINEISVENLSKSETVGHTS 535

Query: 535 QTLNGRAHELYELVARFKV 553
             +   + ++ +L+A FKV
Sbjct: 536 DRIAEDSRQMAQLIAVFKV 554