Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  239 bits (609), Expect = 3e-67
 Identities = 154/486 (31%), Positives = 244/486 (50%), Gaps = 15/486 (3%)

Query: 72  RQAPLDDAIAILREIQFGQSGYIFGYDSKGTRLLLGKATNGLG---DNFMNMQDTQGNYL 128
           +Q  L+ A+  +   +FG+ G+ +  DS G ++L    ++ +G    N    +   GN  
Sbjct: 213 KQDKLNSALQTVLAAKFGEDGHFWVQDSDG-KILAHSQSSQIGRITPNAAKAKQALGN-- 269

Query: 129 IQDLLKNAKLNQFTTYYFPKPGEQTPLPKLSY-SVYLPQWDLTIGTGFYTDDVDAEIAEM 187
                   + + F       P   +   +++Y    LP+W   IGTG Y  ++ A    +
Sbjct: 270 --------QADAFVALPVTDPKTHSQETQIAYVRKILPEWGWVIGTGTYESNISAIEQRL 321

Query: 188 EARAEEQLEQGLYTLAGITLLIVILVSVMAIMINRSIMRPLELFDNSISSFASGDADLTA 247
            A  E   +Q +Y    I  L++I+     + +   I+  + +  N I + ++GDADLT+
Sbjct: 322 TAGTEAIFKQKIYRSIAIASLLIIIALAFCVFLLNKIIADMVMLKNRIDTLSTGDADLTS 381

Query: 248 RMEKFSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAMSQRATQVDHLASNQR 307
           R+   S  E   + H+ N F+  LQ ++  ++   Q++ +    +   +       S   
Sbjct: 382 RLAITSKDELAAIGHSVNSFIGYLQAMMLEISHASQKITQGIGQLDSHSENNRQALSKHS 441

Query: 308 EETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNAAARSVQALAEEVA 367
            ETE V TA+++M  +A  ++ +A   A S   A + A      V+ AA SVQALA E+ 
Sbjct: 442 SETELVVTAISQMNASADAVAQSAGKMAASTHQANEEAKTSTLTVSDAAGSVQALANEMN 501

Query: 368 DASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRK 427
            AS  I  +  + N I S L VI++IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR 
Sbjct: 502 SASQSIHTMSENTNQIISVLGVIKEIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRS 561

Query: 428 LASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAAAEALQKIQASIGT 487
           LASRTQ  T QI  ++  L+  +D A + M  +Q       +        L  +  SI  
Sbjct: 562 LASRTQSCTTQIEQILTTLRRDADTAEQLMLETQNSCQQVTQNTARVTSNLGAVTDSIAE 621

Query: 488 IMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGSQTLNGRAHELYEL 547
           + D+   IA+A+E+QS+V  EISQ +  I   +        Q  + +Q+L+    +L  +
Sbjct: 622 LNDLGGQIASASEQQSVVTAEISQNMHTIEAMAQTLLQNGQQTLESTQSLSAANQQLSAM 681

Query: 548 VARFKV 553
           V +FK+
Sbjct: 682 VRKFKL 687



 Score = 49.7 bits (117), Expect = 4e-10
 Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 50/217 (23%)

Query: 1   MSLTIRQRLYILSLVPLLTIALSMMYFTFSETRLLSQEQMRNTREAMMEMKQAELKSYL- 59
           M +TI+ +L IL  V  L +A+S ++     T +++QE ++  +  + +  +A +K  L 
Sbjct: 1   MKITIKAKLIIL--VGALLVAVSGLFII--NTYIIAQEVLKQEQSNINQQVEALIKQNLI 56

Query: 60  -QIADTALAPL-----KARQAPLDDAIA----------------------------ILRE 85
            Q+ DT    +     ++R+A +  A+                              L E
Sbjct: 57  GQV-DTLSRSVNDFYQQSREANIKQALGDEIKMFRDVINRMYENNLTDDAAMMVYTFLNE 115

Query: 86  IQFGQSGYIFGYDSKGTRLLLGKATNGLGD----NFMNMQDTQGNYLIQDLLKNAKLNQ- 140
            Q+G   Y+F Y++      L    +G+G     N  +  D +GNY  +D++  AK    
Sbjct: 116 YQWGNGRYLFAYNAD----TLENEASGMGGVSMGNSRDALDEKGNYYARDIVAAAKSKPI 171

Query: 141 -FTTYYFPKPGEQTPLPKLSYSVYLPQWDLTIGTGFY 176
            FT+Y+F  P       KLS S Y    +L I TG Y
Sbjct: 172 GFTSYFFSNPSTGQVEEKLSASFYFEPLNLVIATGEY 208