Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  253 bits (645), Expect = 2e-71
 Identities = 148/377 (39%), Positives = 231/377 (61%), Gaps = 5/377 (1%)

Query: 181 DAEIAEMEARAEEQLEQGLYTLAGITLLIVILVSVMAI----MINRSIMRPLELFDNSIS 236
           +  + +++A++ + +         I++++ IL++++ I     I RSIM P++   ++IS
Sbjct: 245 EKSLVQLKAQSMDAISDAESATVTISIVVFILITLVLIGFTLAIIRSIMEPVQRISDAIS 304

Query: 237 SFASGDADLTARMEKFSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAMSQRA 296
              +   DLT R +     E  +++ +FN  VES Q++I+ V    + V      +S+ +
Sbjct: 305 RIEA-TKDLTLRCDTKVDDEIGQIARHFNSMVESFQSLIREVLTSVEVVNHSCQELSENS 363

Query: 297 TQVDHLASNQREETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNAAA 356
            +       Q  ET+ VATA+TEM  T  EI++N   AA+ A +  DNA      V    
Sbjct: 364 MRASEGVGRQLNETDMVATAITEMGATIDEIASNTELAAERAGNTHDNAQQGQVGVEHTI 423

Query: 357 RSVQALAEEVADASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQGR 416
             +QALA ++ D++ V+++LE D   I S L VI+ IAEQTNLLALNAAIEAARAGEQGR
Sbjct: 424 EKIQALAAQLTDSAQVVSELEKDSETIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQGR 483

Query: 417 GFAVVADEVRKLASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAAAE 476
           GFAVVADEVR LA RTQEST++I  +IQ L++ + + V+ ME++Q++ I +  +A +A  
Sbjct: 484 GFAVVADEVRSLAMRTQESTEEIAGIIQTLQSRTRSIVQLMEATQRQGIESADQAASAGA 543

Query: 477 ALQKIQASIGTIMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGSQT 536
            L++I A +  IMDM+  IA A EEQS+V  E+++ +VVI D ++ESA  A++N + S  
Sbjct: 544 LLEQINADVTNIMDMSTQIAAAIEEQSMVASEVNKNVVVIRDIAAESAQAADENAKASDD 603

Query: 537 LNGRAHELYELVARFKV 553
           +  R   LY+ V+ FK+
Sbjct: 604 VKARTQVLYQAVSLFKI 620