Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  268 bits (684), Expect = 5e-76
 Identities = 174/542 (32%), Positives = 286/542 (52%), Gaps = 21/542 (3%)

Query: 22  LSMMYFTFSETRLLSQEQMRNTREAMMEMKQAELKSYLQIADTALAPL-KARQA------ 74
           L M+      T ++    + N  E +++ KQA+L +   + +  ++   +A QA      
Sbjct: 18  LFMLLLAIVATGIMFVFALANIEEVLVKEKQAKLSALSDVGEKVISQFYEASQAGSMSEE 77

Query: 75  -PLDDAIAILREIQFGQSGYIFGYDSKGTRLLLGKATNGLGDNFMNMQDTQGNYLIQDLL 133
               +AIA L  +++  + Y +  D +G  +    A   +G N + M+D  G  L + ++
Sbjct: 78  EAKRNAIAALDALRYEGNEYFWTIDRQGIMVQHAFAKKLVGTNVLGMKDPNGVRLFEKMV 137

Query: 134 KNAKLNQFTT--YYFPKPGEQTPLPKLSYSVYLPQWDLTIGTGFYTDDVDAEIAEMEARA 191
                + +    Y + +P    P PK+S       W   +GTG Y DD+           
Sbjct: 138 TGTANSDYALIEYMWNRPNASAPSPKMSVVKRFTPWGWIVGTGIYVDDI----------- 186

Query: 192 EEQLEQGLYTLAGITLLIVILVSVMAIMINRSIMRPLELFDNSISSFASGDADLTARMEK 251
           +E+++  +Y    I + + + V ++  +I+RSI  P+     +  + A G+ DLT R+E+
Sbjct: 187 QEEMQAFIYKYLLICIAVWLPVILILGVISRSISAPMADTIAAFENIARGEGDLTLRLEE 246

Query: 252 FSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAMSQRATQVDHLASNQREETE 311
               E  +++ +FN FV  +Q ++  V+       E    ++  + Q   + +N + ET+
Sbjct: 247 SGRDELKQVAASFNEFVAKIQALVNSVSASVTHSRELAEGLADISAQASMVTANMQAETQ 306

Query: 312 QVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNAAARSVQALAEEVADASS 371
            VATA+ EM+  + E+++NA  AA SA  A+  A D   +V+ A   ++ L+ E+   + 
Sbjct: 307 SVATAINEMSMASSEVASNAQLAADSAGSADGEADDTVAVVDGAVAKIKGLSNELEVTAD 366

Query: 372 VIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASR 431
               L+     I   L VI  IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR LASR
Sbjct: 367 EAQALQISSGKIGQILDVIVGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRTLASR 426

Query: 432 TQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAAAEALQKIQASIGTIMDM 491
           TQESTQ+I+ +I+ ++A  D+   ++  ++ +S  TV E +   EALQ I++SI  I DM
Sbjct: 427 TQESTQEINAIIEAIRASVDSVNASVARAKAQSEQTVGETSQVVEALQTIKSSIRQISDM 486

Query: 492 NALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGSQTLNGRAHELYELVARF 551
           N  IATATEEQS V  E++  +  I+D S E+   + +    S+ +   + +L  L++ F
Sbjct: 487 NIQIATATEEQSAVIAELNMNVTRINDISLENQQKSEEIGSTSEQIKSGSADLESLISTF 546

Query: 552 KV 553
           K+
Sbjct: 547 KL 548