Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  240 bits (613), Expect = 1e-67
 Identities = 146/378 (38%), Positives = 229/378 (60%), Gaps = 10/378 (2%)

Query: 180 VDAEIAEMEARAEEQLEQGLYTLAGITLLIVILVSVMAIMINRSIMRPLELFDNSISSFA 239
           +++    +  +A ++++   Y    + L+ +++  +++I + R +   L+  +N+++  A
Sbjct: 303 IESTSQAVSVKAIDEIDSASYKTLALVLIAIVVAVLVSIAVIRPLKNSLDKVNNALNILA 362

Query: 240 SGDADLTARMEKFSVPEFHKLSHNFNRFVESL----QNIIKRVNQVGQQVVEETNAMSQR 295
           SG+  LT +++     EF +LS N NR V+SL    Q I+ R NQ+     EET+A++ +
Sbjct: 363 SGN--LTHKLDDSGHDEFAELSRNCNRLVDSLRTLIQGILDRSNQLAA-AAEETSAITAQ 419

Query: 296 ATQVDHLASNQREETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNAA 355
            T        Q+ + +QVATA T+++++A ++S +A+ A    + A++ A  +  I +  
Sbjct: 420 TTAG---IQEQKNQVDQVATATTQLSSSAMQVSTSADEALNQIRQADEEAQHMRAIADEN 476

Query: 356 ARSVQALAEEVADASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQG 415
            R++ ALA+EVA A  VI K+  D  +I S L VI+ IAEQTNLLALNAAIEAARAGEQG
Sbjct: 477 KRTILALADEVAKAGQVINKVHSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQG 536

Query: 416 RGFAVVADEVRKLASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAAA 475
           RGFAVVADEVR LASRTQ+STQ+I  MIQ L+ G+  AV  ME  +Q++ + V +   A 
Sbjct: 537 RGFAVVADEVRSLASRTQDSTQEIQQMIQVLQQGTQEAVSVMELGRQQANSCVEKTEQAN 596

Query: 476 EALQKIQASIGTIMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGSQ 535
            AL+ I  ++    D    IA A +EQ++V Q++S+++  I+  S E+A  A+Q  Q S 
Sbjct: 597 VALESISNAVHYAHDSGTHIANAAQEQNLVSQQVSEKLEHIAAISEETATGADQTAQSSH 656

Query: 536 TLNGRAHELYELVARFKV 553
            +   A EL   V  FKV
Sbjct: 657 QVAQLAEELQASVGEFKV 674