Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  288 bits (738), Expect = 3e-82
 Identities = 186/553 (33%), Positives = 289/553 (52%), Gaps = 4/553 (0%)

Query: 3   LTIRQRLYILSLVPLLTIALSMMYFTFSETRLLSQEQMRNTREAMMEMKQAELKSYLQIA 62
           L ++ +L + +L+PL+   L ++  T++      +E M   + ++   ++A+LK  + IA
Sbjct: 4   LRMKNKLLVFALLPLILSFLFLVSITYNLESNSLEENMSTFKASLYSERKAQLKDQVDIA 63

Query: 63  DTALAPLKARQAPLDDAIAILREIQFGQSGYIFGYDSKGTRLLLGKATNGLGDNFMNMQD 122
              +   +       D    LR ++FG +GY F YD  G            G   + M D
Sbjct: 64  -LDIVEHQLSLGTAGDVNKALRNVRFGTAGYFFIYDFDGFNRFHAVKPALEGTAQIGMTD 122

Query: 123 TQGNYLIQDLLKNAKLNQ-FTTYYFPKPGEQTPLPKLSYSVYLPQWDLTIGTGFYTDDVD 181
             G  ++  L+  A+    F  Y + KPG    +PK+ Y+  +P  D  +GTG YTDD+D
Sbjct: 123 PNGKKIVVGLIDAARSGDGFFNYDYSKPGVTGLVPKIGYAATVPGKDWILGTGAYTDDID 182

Query: 182 AEIAEMEARAEEQLEQGLYTLAGITLLIVILVSVMAIMINRSIMRPLELFDNSISSFASG 241
           A++        + +      +    L++V + +V+ ++  + ++ P+     ++   A G
Sbjct: 183 AQVESYREVMTKHMNDKAMMILLFALVLVAITAVVMLVAAQRMVNPIHNMVQNLEDIAKG 242

Query: 242 DADLTARMEKFSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEET-NAMSQRATQVD 300
           + DLT R++     E   L   FN+FV+ LQ IIK V +   +V     N  SQ A    
Sbjct: 243 EGDLTKRLDVQGSDEIAMLGRAFNQFVDKLQGIIKDVARATVEVKSGADNISSQTAAMAQ 302

Query: 301 HLASNQREETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNAAARSVQ 360
            L S+  E T+QV TA+TEM+ TA E++ +    A++ + A  +  +    V+++   V 
Sbjct: 303 QLISHNNE-TDQVVTAITEMSATASEVAMSTTQVAEATQAATQDVGNAQECVDSSLHEVS 361

Query: 361 ALAEEVADASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQGRGFAV 420
            L  E+  A+  I  L      I S L+VI  IAEQTNLLALNAAIEAARAGEQGRGFAV
Sbjct: 362 TLMAEIDMAAGHINSLNEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAV 421

Query: 421 VADEVRKLASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAAAEALQK 480
           VADEVR LASRTQ ST +I+ M+ +L      AV +MESSQQ    +V  + A +++L  
Sbjct: 422 VADEVRSLASRTQASTLEINEMLSELHNLVSLAVSSMESSQQSCHRSVTSSRAISDSLGA 481

Query: 481 IQASIGTIMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGSQTLNGR 540
           + +++ +I DM+  IATA  EQS V +EI++ +  I +  +E    +N     SQ L   
Sbjct: 482 VTSAVTSINDMSTQIATAATEQSSVTEEINRNVFAIQEIVNELLQASNSASDTSQGLANE 541

Query: 541 AHELYELVARFKV 553
              L  LV +FKV
Sbjct: 542 GRNLDTLVGQFKV 554