Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  240 bits (612), Expect = 1e-67
 Identities = 160/478 (33%), Positives = 253/478 (52%), Gaps = 21/478 (4%)

Query: 76  LDDAIAILREIQFGQSGYIFGYDSKGTRLLLGKATNGLGDNFMNMQDTQGNYLIQDLLKN 135
           LDD + +L+  +   +G+++  D+KG  + L   T+ +G    ++    G  + ++LL  
Sbjct: 182 LDDMVRLLKSFKIEDTGFVYLVDAKGD-VKLHSDTSQIGK--ASLSSLYGGNVTRELLNK 238

Query: 136 AKLNQFTTYYFPKPGEQTPLPKLSYSVYLPQWDLTIGTGFYTDDVDAEIAEMEARAEEQL 195
                  T      GE      L  S Y+P  D  +          A++   E  A   L
Sbjct: 239 GDFGLTQTEL---DGETL----LVASSYIPSMDWYLV---------AQVPRAEVFA--LL 280

Query: 196 EQGLYTLAGITLLIVILVSVMAIMINRSIMRPLELFDNSISSFASGDADLTARMEKFSVP 255
           E+  Y +   T+LI      ++  ++ S+ +P+    + +     G+ DL  R+      
Sbjct: 281 EESAYQILVWTVLIAAAFIGLSTFVSASVSQPIAKVADMLQDIGQGEGDLRQRLPVEGND 340

Query: 256 EFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAMSQRATQVDHLASNQREETEQVAT 315
           E  +L+  FN F+E +Q+ I  V     Q+      ++ +A Q    +  Q+++T  V T
Sbjct: 341 ELAQLAKGFNSFIEKIQHSIIEVTDTSVQLSHAAKDVANQAQQTQDDSQLQKDQTMMVVT 400

Query: 316 AMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNAAARSVQALAEEVADASSVIAK 375
           A+ EM  T  EI+ NA  AA +AKDA++ +++   +V  A  ++  L+++V    +VI  
Sbjct: 401 AINEMGATVHEIAGNAAQAADNAKDADNASSNGQIVVTRARDTINQLSQDVEQVGNVIES 460

Query: 376 LEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASRTQES 435
           L     +I S L VI+ +++QTNLLALNAAIEAARAGE GRGFAVVA+EVR LASRT  S
Sbjct: 461 LATHTTSIGSILDVIRAVSDQTNLLALNAAIEAARAGEAGRGFAVVAEEVRNLASRTAAS 520

Query: 436 TQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAAAEALQKIQASIGTIMDMNALI 495
           T ++  MI  L++ +  AV+AM  S+ RS   V+  + A+  L +I   IG I DMN  +
Sbjct: 521 TDEVQKMIDNLQSEAARAVEAMTQSKSRSQEGVQAVDEASHTLTEISQQIGAITDMNIQV 580

Query: 496 ATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGSQTLNGRAHELYELVARFKV 553
           A ATEEQS V ++I++ +  IS+ +  +++ +    Q SQ+LN  AH L  LVA FKV
Sbjct: 581 AAATEEQSTVVEDINRNVTEISEITQRTSETSQAVAQASQSLNQLAHRLDTLVAGFKV 638