Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  245 bits (626), Expect = 3e-69
 Identities = 163/414 (39%), Positives = 236/414 (57%), Gaps = 25/414 (6%)

Query: 145 YFPKPGEQTPLPKLSYSVYLPQ--WDLTIGTGFYTDDVDAEIAEMEARAEEQLEQGLYTL 202
           + P   E     KL + V +P   W+L I            + + E   E  L   L T 
Sbjct: 226 WLPMYFEHESRDKLVWGVDIPNTDWELVI------------VLDKET-LEAPLTNLLLTQ 272

Query: 203 AGITLLIVILVSVMAIM-INRSIMRPLELFDNSISSFASGDADLTARMEKFSVPEFHKLS 261
            G++  +V+L+SV+AI  +   ++ PL     +++  A G+ DLT R+E  +  E   L+
Sbjct: 273 LGLSA-VVLLLSVLAISWLVNLLLGPLGRVSQALARIADGNGDLTQRIEVDTQDEVGVLA 331

Query: 262 HNFNRFVESLQNIIKRVNQVGQQVVEETNAMSQRATQVDHLA----SNQREETEQVATAM 317
            +FNRFV S   +I  +    + +  E +A ++ + + +HLA      Q++E   VATA+
Sbjct: 332 DSFNRFVGSQHQLISHI----RHLAGELDADAEHSLKTNHLAVAELQRQQQEVAMVATAV 387

Query: 318 TEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNAAARSVQALAEEVADASSVIAKLE 377
           TEM +   EI+ NA N A +A+ +  ++     +VN    S+ +LA+EV  A+ VI  L 
Sbjct: 388 TEMASATNEIAANAENTATAAQQSAASSFQGKELVNKTRSSINSLADEVTQATEVIEDLS 447

Query: 378 GDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASRTQESTQ 437
               +I+S LA IQ IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RTQ+STQ
Sbjct: 448 RHAQSISSILATIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQ 507

Query: 438 QIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAAAEALQKIQASIGTIMDMNALIAT 497
           ++H  I+ L+  +  AV  MESSQ  +  +V +ANAA +AL++I  ++  I DM   IAT
Sbjct: 508 EVHATIETLQRTTAKAVSLMESSQMLAGNSVEDANAAVKALEEITQAVNVISDMAGQIAT 567

Query: 498 ATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGSQTLNGRAHELYELVARF 551
           A EEQ+ V  EI+Q  V I D + E  + A  +   +Q L  RA++L   VA F
Sbjct: 568 AAEEQTQVTGEITQNTVAIKDVTDEITEAAKSDLTQAQALKARANDLNAQVATF 621