Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  243 bits (619), Expect = 2e-68
 Identities = 164/561 (29%), Positives = 278/561 (49%), Gaps = 27/561 (4%)

Query: 3   LTIRQRLYILSLVPLLTIALSMMYFTFSETRLLSQEQMRNTREAMMEMKQAELKSYLQIA 62
           +T  ++  IL  + ++ +  ++    F+   +  +EQ  N  E        +L S L + 
Sbjct: 2   ITFLRQFTILKRLMMMLVMAAIGTVCFASFSI--KEQYSNLIEQKWLQIDGQLGSILSVI 59

Query: 63  DT----ALAPLKARQAPLDDAIAILREIQFGQSGYIFGYDSKGTRLLLGKATNGLGDNFM 118
           D     A +     Q     A +++ + ++   GY    D     L  G++ + +G +  
Sbjct: 60  DVYRQDAASGKMREQEAQKAAASLINQTRYAGVGYFILIDDNNQILAHGESASMIGTSAQ 119

Query: 119 NMQDTQGNYLIQDLLKNAKLNQFTTYYFP--KPGEQTPLPKLSYSVYLPQWDLTIGTGFY 176
           N     G   +  LL  A+ N  +T  +P   P  +    KL+ + Y PQW  T+ TG Y
Sbjct: 120 NFTLPNGTNPLTTLLSQARQNGKSTLEYPIANPVSKIVEDKLAEARYYPQWGWTLITGAY 179

Query: 177 TDDVDAEIAEMEARAEEQLEQGLYTLAGITLLIVILVSV----MAIMINRSIMRPLELFD 232
             DV               ++ LY +    L+I+ L+SV      +++N SI  PL    
Sbjct: 180 LSDV---------------KESLYEVMVDYLIIMFLISVPIFAFFLVLNHSITSPLNDAI 224

Query: 233 NSISSFASGDADLTARMEKFSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAM 292
            ++   A G+ DL+ R+      E   L+H FN F + + +++  +  +GQ +  +   +
Sbjct: 225 EALEDIAQGEGDLSQRLSTQGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKLL 284

Query: 293 SQRATQVDHLASNQREETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIV 352
                + +  A +   ET  VATA+ +M +T  E+++N   AA +A   +  A     ++
Sbjct: 285 MLAVEESNQSAEHIHRETGSVATAVNQMLSTTHEMASNTQQAADAATSVKSQAQQSKGVI 344

Query: 353 NAAARSVQALAEEVADASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAG 412
           +   R  + L +E+  + ++  KL      I S L VI+ IAEQTNLLALNAAIEAARAG
Sbjct: 345 DNTVRDTEKLVQELKASEAITQKLGQASGQIGSILDVIRAIAEQTNLLALNAAIEAARAG 404

Query: 413 EQGRGFAVVADEVRKLASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREAN 472
             GRGFAVVADEVR LA+RTQ+ST +I  +I +++ G  + +++   +Q++S     +A 
Sbjct: 405 SHGRGFAVVADEVRALANRTQDSTNEIQKIISEIQTGVGSVMQSNSQTQRQSEELQAKAQ 464

Query: 473 AAAEALQKIQASIGTIMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQ 532
            A +A+  I   I  I DMN  +A+ATEEQS+V +EI++ I  IS+ +  S      N +
Sbjct: 465 EAGQAMAAILELIAHISDMNTQLASATEEQSLVTEEINRNICNISELTEVSVKANESNSR 524

Query: 533 GSQTLNGRAHELYELVARFKV 553
            +Q+L   + ++   + +FK+
Sbjct: 525 AAQSLQDISQDMSHTLGQFKI 545