Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  301 bits (772), Expect = 3e-86
 Identities = 184/553 (33%), Positives = 300/553 (54%), Gaps = 2/553 (0%)

Query: 2   SLTIRQRLYILSLVPLLTIALSMMYFTFSETRLLSQEQMRNTREAMMEMKQAELKSYLQI 61
           +L++R +L +LSL PL+   L ++  ++   +    E++   R  ++  ++ ++K   +I
Sbjct: 3   NLSLRNKLLLLSLFPLIFTLLVLITLSYYVEQESLAEEVVTFRTKLVGERKQQIKEATEI 62

Query: 62  ADTALAPLKARQAPLDDAIAILREIQFGQSGYIFGYDSKGTRLLLGKATNGLGDNFMNMQ 121
           A + +   +       +    LR+I+FG +GY F YDS+G  +      N  G N ++M 
Sbjct: 63  A-SGIVNYQLSLKDKGNVNQALRDIRFGSAGYFFMYDSQGKNIFHALMPNLEGQNKIDMT 121

Query: 122 DTQGNYLIQDLLKNAKLNQFT-TYYFPKPGEQTPLPKLSYSVYLPQWDLTIGTGFYTDDV 180
           D +G  +I  LL  AK      +YY+ KP     + K+S+ + +P  D  +GTG Y DD+
Sbjct: 122 DPRGTKIIVGLLDAAKRGDGNFSYYYQKPNTNEQIEKISFVMMVPGTDWMLGTGAYIDDI 181

Query: 181 DAEIAEMEARAEEQLEQGLYTLAGITLLIVILVSVMAIMINRSIMRPLELFDNSISSFAS 240
           +A + +      EQ+ +    +  I L++    + + ++    ++ P++   ++++  A 
Sbjct: 182 EAVVEDYRQTVTEQMAEKSLMILLIALVLTGATAFVIMVAAHRMVVPIKNMADNLNDIAK 241

Query: 241 GDADLTARMEKFSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAMSQRATQVD 300
           G+ DLT R+      E  +L   FN FV+ LQ+II  V     +V    NA+  +   + 
Sbjct: 242 GEGDLTKRLSVKGEDEIAQLGRAFNLFVDKLQHIIGDVASATAKVKTAANAIHDQTKVMS 301

Query: 301 HLASNQREETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNAAARSVQ 360
               +   ET+QV TA+TEM++TA E++ N    A++ + A  +  +    V+A+   + 
Sbjct: 302 SQLLSHNNETDQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVANAQRCVDASLEEIA 361

Query: 361 ALAEEVADASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQGRGFAV 420
           AL E++  A+  I  L      I S L+VI  IAEQTNLLALNAAIEAARAGEQGRGFAV
Sbjct: 362 ALMEQINHAAGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAV 421

Query: 421 VADEVRKLASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAAAEALQK 480
           VADEVR LASRTQ ST +I+ M+  L      AVK M+ SQQ  + +V  + A +E+L  
Sbjct: 422 VADEVRSLASRTQASTLEINEMLSALHKLVSQAVKTMDESQQSCVRSVESSRAISESLGS 481

Query: 481 IQASIGTIMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGSQTLNGR 540
           + +++  I DM+  IATA  EQS V +EI++ +  I +  +E    +    + SQT++  
Sbjct: 482 VTSAVTAINDMSTQIATAATEQSSVTEEINRNVYAIQEIVNELLHSSEHAARVSQTVSQE 541

Query: 541 AHELYELVARFKV 553
              L  LV +FK+
Sbjct: 542 GTNLGNLVGQFKI 554