Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  252 bits (644), Expect = 3e-71
 Identities = 163/412 (39%), Positives = 240/412 (58%), Gaps = 25/412 (6%)

Query: 145 YFPKPGEQTPLPKLSYSVYLPQWDLTIGTGFYTDDVDAEIAEMEARAEEQLEQGLYTLAG 204
           YF   G      KL + V +P  D  +      + ++A + ++           L T  G
Sbjct: 230 YFENEGRD----KLVWGVDIPNTDWELVIVLDKETLEAPLTDL-----------LLTQFG 274

Query: 205 ITLLIVILVSVMAIM-INRSIMRPLELFDNSISSFASGDADLTARMEKFSVPEFHKLSHN 263
           ++  +V+L+SV+AI  +   ++ PL     +++  A G+ DLT R+E  +  E   L+ +
Sbjct: 275 LSA-VVLLLSVLAISWLVNLLLGPLGRVSQALARIADGNGDLTQRIEVDTQDEVGVLADS 333

Query: 264 FNRFVESLQNIIKRVNQVGQQVVEETNAMSQRATQVDHLA----SNQREETEQVATAMTE 319
           FNRFV S   +I  +    +Q+  E +A ++R+ + +H+A      Q++E   VATA+TE
Sbjct: 334 FNRFVGSQHQLISHI----RQLASELDADAERSLKTNHIAVAELQRQQQEVAMVATAVTE 389

Query: 320 MTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNAAARSVQALAEEVADASSVIAKLEGD 379
           M +   EI+ NA N A +A+ +  ++     +VN    S+ +LA+EVA A+ VI  L   
Sbjct: 390 MASATNEIAANAENTATAAQQSAASSFQGKELVNKTRSSINSLADEVAQATDVIEDLSRH 449

Query: 380 VNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASRTQESTQQI 439
             +I+S LA IQ IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RTQ+STQ++
Sbjct: 450 AQSISSILATIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEV 509

Query: 440 HTMIQQLKAGSDAAVKAMESSQQRSITTVREANAAAEALQKIQASIGTIMDMNALIATAT 499
           H  I+ L+  +  AV  MESSQ  +  +V +ANAAA+AL++I  ++  I DM   IATA 
Sbjct: 510 HATIETLQRTTAKAVSLMESSQMLAGNSVEDANAAAKALEEITQAVNVISDMAGQIATAA 569

Query: 500 EEQSIVGQEISQRIVVISDQSSESADLANQNRQGSQTLNGRAHELYELVARF 551
           EEQ+ V  EI+Q  V I D + E  + A  +   +Q L  RA++L   VA F
Sbjct: 570 EEQTQVTGEITQNTVAIKDVTDEITEAAKSDLTQAQALKARANDLNAQVATF 621