Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  306 bits (784), Expect = 1e-87
 Identities = 189/556 (33%), Positives = 303/556 (54%), Gaps = 8/556 (1%)

Query: 2   SLTIRQRLYILSLVPLLTIALSMMYFTFSETRLLSQEQMRNTREAMMEMKQAELKSYLQI 61
           +L++R +L +LSL PL+   L +M  ++   +    E++   R  ++  ++ ++K   +I
Sbjct: 3   NLSLRNKLLLLSLFPLILTLLVLMTVSYYVEQESLAEEVVTFRTKLVGERKQQIKEATEI 62

Query: 62  ADTALAPLKARQAPLDDAIAI---LREIQFGQSGYIFGYDSKGTRLLLGKATNGLGDNFM 118
           A    A +   Q  L D   +   LR+I+FG +GY F YDS+G  +      N  G N +
Sbjct: 63  A----AGIVQYQLSLKDQGNVNQALRDIRFGSAGYFFIYDSQGKNIFHALMPNLEGQNKI 118

Query: 119 NMQDTQGNYLIQDLLKNAKLNQFT-TYYFPKPGEQTPLPKLSYSVYLPQWDLTIGTGFYT 177
           +M D +G  +I  LL  AK      +YY+ KP     + K+SY + +P  D  +GTG Y 
Sbjct: 119 DMTDPRGTKIIVGLLDAAKRGDGNFSYYYQKPNTNEQIEKISYVMMVPGTDWMLGTGAYI 178

Query: 178 DDVDAEIAEMEARAEEQLEQGLYTLAGITLLIVILVSVMAIMINRSIMRPLELFDNSISS 237
           DD++A + +      EQ+    + +  I L++  + + + ++    ++ P++   +S++ 
Sbjct: 179 DDIEAVVEDYRQTVTEQMADKSFMILLIALVLTGITAFIIMVAAHRMVVPIKNMADSLND 238

Query: 238 FASGDADLTARMEKFSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAMSQRAT 297
            A G+ DLT R+      E  +L   FN FV+ LQ II  V     +V    NA+  +  
Sbjct: 239 IAKGEGDLTKRLSVKGEDEIAQLGQAFNLFVDKLQTIIGDVANATAKVKSAANAIHDQTK 298

Query: 298 QVDHLASNQREETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNAAAR 357
            +     +   ET+QV TA+TEM++TA E++ N    A++ + A  +  +    V+A+  
Sbjct: 299 VMSSQLLSHNNETDQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVANAQRCVDASLE 358

Query: 358 SVQALAEEVADASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQGRG 417
            +  L  ++ +A+  I  L      I S L+VI  IAEQTNLLALNAAIEAARAGEQGRG
Sbjct: 359 EIAGLMSQINNAAGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRG 418

Query: 418 FAVVADEVRKLASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAAAEA 477
           FAVVADEVR LASRTQ ST +I+ M+ +L      AVK M+ SQQ  + +V  + A +E+
Sbjct: 419 FAVVADEVRNLASRTQASTLEINEMLSELHKLVSVAVKTMDESQQSCVRSVDSSRAISES 478

Query: 478 LQKIQASIGTIMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGSQTL 537
           L  + +++  I DM+  IATA  EQS V +EI++ +  I +  +E    +    + SQT+
Sbjct: 479 LGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVYAIQEIVNELLHSSEDAAKVSQTV 538

Query: 538 NGRAHELYELVARFKV 553
           +     L +LV +FK+
Sbjct: 539 SQEGINLGKLVGQFKI 554