Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  238 bits (607), Expect = 4e-67
 Identities = 163/561 (29%), Positives = 278/561 (49%), Gaps = 27/561 (4%)

Query: 3   LTIRQRLYILSLVPLLTIALSMMYFTFSETRLLSQEQMRNTREAMMEMKQAELKSYLQIA 62
           +T  +R  IL  + ++ +  ++    F+   +  +EQ  N  E   +    +L S L + 
Sbjct: 2   ITFLRRFTILQRLMMMLVMAAIGTVCFASFSI--KEQYSNLIEQKWQQIDGQLGSLLSVI 59

Query: 63  DT--------ALAPLKARQAPLDDAIAILREIQFGQSGYIFGYDSKGTRLLLGKATNGLG 114
           D          L+  +A+QA    A  ++ + ++   GY    D     L  G+ ++ +G
Sbjct: 60  DIHRQDALSGKLSEAEAQQA----AANLIDQTRYAGVGYFIVIDDNNQILAHGERSDLIG 115

Query: 115 DNFMNMQDTQGNYLIQDLLKNAKLNQFTTYYFP--KPGEQTPLPKLSYSVYLPQWDLTIG 172
            + +N +   G   +  +L  A+ N  T   +P   P  +    KL  + Y P+W  T+ 
Sbjct: 116 TSALNFKLQNGTNPLATMLPLARQNGKTMLEYPIANPVSKNIEDKLVEARYYPEWGWTLI 175

Query: 173 TGFYTDDVDAEIAEMEARAEEQLEQGLYTLAGITLLIVILVSVMAIMINRSIMRPLELFD 232
           TG Y  DV           ++ L+  +     I  LI + +    +++N SI  PL    
Sbjct: 176 TGAYLSDV-----------KQSLKAVIIDYLIIMFLISVPIFAFFLVLNHSITSPLNDAI 224

Query: 233 NSISSFASGDADLTARMEKFSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAM 292
           +++   A G+ DL+ R+      E   L+H FN F + + +++  +  +GQ +  +   +
Sbjct: 225 DALEDIAQGEGDLSQRLSTQGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKQL 284

Query: 293 SQRATQVDHLASNQREETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIV 352
                + +  A +   ET  VATA+ +M +T  E+++N   AA +A   ++ A     ++
Sbjct: 285 MLAVEESNQSAEHIHRETGSVATAVNQMLSTTHEMASNTQQAADAANSVKNQAQQSQAVI 344

Query: 353 NAAARSVQALAEEVADASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAG 412
           +   R  + L +E+  +  +  KL      I S L VI+ IAEQTNLLALNAAIEAARAG
Sbjct: 345 DDTVRDTEKLVQELRASEVITQKLGQSSAQIGSILDVIRSIAEQTNLLALNAAIEAARAG 404

Query: 413 EQGRGFAVVADEVRKLASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREAN 472
             GRGFAVVADEVR LA+RTQ+ST +I  +I  ++ G ++ +K+   +Q +S     +A 
Sbjct: 405 SHGRGFAVVADEVRALANRTQDSTNEIQKIISDIQMGVNSVMKSNSQTQTQSDELQAKAR 464

Query: 473 AAAEALQKIQASIGTIMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQ 532
            A  A+  I   I  I DMN  +A+ATEEQS+V +EI++ I  IS+ +  S      N +
Sbjct: 465 EAGNAMAAILQLIAHISDMNTQLASATEEQSLVTEEINRNICNISELTEVSVKANEGNSR 524

Query: 533 GSQTLNGRAHELYELVARFKV 553
            +Q+L   + ++   + +FK+
Sbjct: 525 AAQSLQDISQDMSHTLGQFKI 545