Pairwise Alignments

Query, 239 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 249 a.a., DNA-binding regulatory protein, YebC/PmpR family from Pseudomonas stutzeri RCH2

 Score =  138 bits (348), Expect = 9e-38
 Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 6/221 (2%)

Query: 21  KVYSKYGKEIYVCAKNGGTDPDMNLSLRHLITKAKKDQVPAHVIEKALDKASGGAGEDYQ 80
           K+++K  +E+ V AK+GG  P  N  LR  + KA    +   VI++A+ + +G +  D  
Sbjct: 23  KIFTKLIRELTVAAKHGGGVPADNPRLRLAVDKALTANMSRDVIDRAIARGAGSSEADNM 82

Query: 81  PA-RYEGFGPGGASVIVDCLTDNGNRTYQDVRQCFVKTGAKIGTPGVVAHMFDHQAVFQF 139
               YEG+ P G ++I++ +TDN NRT  +VR  F K G  +GT G VA+MFD +    +
Sbjct: 83  TELSYEGYAPSGVAIIIEAMTDNRNRTAAEVRHAFSKNGGNLGTDGSVAYMFDRKGQISY 142

Query: 140 -QGDDEEAILEALMMADAEVTDIEHEDGVITVFAPNTEFFKVKTALNEAFPDLTLDVEEI 198
             G DE+A++EA + A A+   +  EDG + ++    +F  V  AL +A      D  E+
Sbjct: 143 APGVDEDALMEAALEAGADDV-VSQEDGSVEIYTSFADFLSVNEALTQA--GFKGDEAEV 199

Query: 199 TFVPQNRTVVSG-EDAEKFQKFLDMLDDCDDVQQVYHNADI 238
             +P     ++  E A+K  + +D L+D DDVQ VYHNA+I
Sbjct: 200 AMIPSIMAPITDVETAQKVLRLIDALEDLDDVQNVYHNAEI 240