Pairwise Alignments

Query, 239 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 253 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score =  123 bits (308), Expect = 4e-33
 Identities = 79/236 (33%), Positives = 125/236 (52%), Gaps = 11/236 (4%)

Query: 9   KASMAKTQGAKIKVYSKYGKEIYVCAKNGGTDPDMNLSLRHLITKAKKDQVPAHVIEKAL 68
           K   A+    K +V+++  + + V A+ G  DP  N  LR  I KAK   +P   IE+A+
Sbjct: 11  KRQKARVDAKKAQVFARLSRAMIVAARQGLPDPAANFQLRTAIEKAKAAGIPNDNIERAI 70

Query: 69  DKASG---GAGEDYQPARYEGFGPGGASVIVDCLTDNGNRTYQDVRQCFVKTGAKIGTPG 125
            K +G   G G  ++  RYEG+GP G +++++ LTDN NRT  ++R  F K G  +G  G
Sbjct: 71  AKGAGTLSGDGRQFESVRYEGYGPSGIAILIEALTDNRNRTAANLRAAFSKQGGNLGETG 130

Query: 126 VVAHMFDHQAVFQFQGDDEEA-ILEALMMADAEVTDIEHEDGVITVFAPNTEFFKVKTAL 184
            V+ MF  + V Q  G   EA +LEAL+   AE  D++ E G I V+    +   + T L
Sbjct: 131 CVSWMFRQRGVVQLTGAIAEADLLEALLDLPAESYDLD-ESGAI-VYCSIADLEALSTQL 188

Query: 185 NE-AFPDLTLDVEEITFVPQN-RTVVSGEDAEKFQKFLDMLDDCDDVQQVYHNADI 238
            +  +P   ++  E+ ++P + + V  GE A    + LD L+  +DV  V  N ++
Sbjct: 189 RQLGYP---VEDSELRWIPNDYQLVTDGEQARSLLRLLDTLETLEDVCSVTANLEL 241