Pairwise Alignments

Query, 239 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 248 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  160 bits (404), Expect = 3e-44
 Identities = 94/234 (40%), Positives = 139/234 (59%), Gaps = 10/234 (4%)

Query: 8   RKASMAKTQGAKIKVYSKYGKEIYVCAKNGGTDPDMNLSLRHLITKAKKDQVPAHVIEKA 67
           RKA+    +G   K+++K  +E+ V A+ GG+D D N  LR  I KA    +    +E+A
Sbjct: 13  RKAAQDAKRG---KLFTKLIRELVVSAREGGSDADANPRLRAAIDKALSANMTRDTVERA 69

Query: 68  LDKASGGA-GEDYQPARYEGFGPGGASVIVDCLTDNGNRTYQDVRQCFVKTGAKIGTPGV 126
           + + SG   G++ +   YEG+GPGG +V+V+C+TDN NR    VR  F K+G  +GT G 
Sbjct: 70  VKRGSGELDGDNLETLIYEGYGPGGTAVMVECMTDNRNRAVTGVRNAFNKSGGNLGTDGS 129

Query: 127 VAHMFDHQAVFQFQ-GDDEEAILEALMMADAEVTDIEHEDGVITVFAPNTEFFKVKTALN 185
           VA++F  + V  F+ G DE+A++EA + A A+   I ++DG   V+    +F  VK AL+
Sbjct: 130 VAYLFTKRGVISFEAGTDEDAMMEAALDAGADDV-IINDDGSADVYTTPEDFGAVKDALD 188

Query: 186 -EAFPDLTLDVEEITFVPQNRTVVSGEDAEKFQKFLDMLDDCDDVQQVYHNADI 238
              F  +     E+T VP  R V+  E A KF + +D L+D DDVQ+VYHNADI
Sbjct: 189 GTGFSSVN---AEVTMVPSTRAVLDAETAPKFLRLIDQLEDHDDVQEVYHNADI 239