Pairwise Alignments

Query, 239 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 248 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  158 bits (399), Expect = 1e-43
 Identities = 90/233 (38%), Positives = 139/233 (59%), Gaps = 8/233 (3%)

Query: 8   RKASMAKTQGAKIKVYSKYGKEIYVCAKNGGTDPDMNLSLRHLITKAKKDQVPAHVIEKA 67
           RKA+    +G   K+++K+ +E+ V A+ GG+DPD N  LR  I KA  + +    +E+A
Sbjct: 13  RKAAQDAKRG---KLFTKFIRELTVAAREGGSDPDSNPRLRAAIDKALSNNMTRDTVERA 69

Query: 68  LDKASGGA-GEDYQPARYEGFGPGGASVIVDCLTDNGNRTYQDVRQCFVKTGAKIGTPGV 126
           + + +G   G+  +   YEG+GPGG +V+V+ +TDN NRT   VR  F K+G  +GT G 
Sbjct: 70  IKRGAGELDGQVLETIMYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFSKSGGNLGTDGS 129

Query: 127 VAHMFDHQAVFQF-QGDDEEAILEALMMADAEVTDIEHEDGVITVFAPNTEFFKVKTALN 185
           VA++F+ + V  + +G DE+ I++A + A AE   + ++D  I V+     F  VK AL+
Sbjct: 130 VAYLFEKRGVISYAEGSDEDTIMDAALDAGAEDV-VTNDDTSIDVYTTPEAFGTVKDALD 188

Query: 186 EAFPDLTLDVEEITFVPQNRTVVSGEDAEKFQKFLDMLDDCDDVQQVYHNADI 238
            A  D      E+T VP  +  +  E A KF + +D L+D DDVQ+VYHNA+I
Sbjct: 189 AAGLDAV--NAEVTMVPSTKAELDAETAPKFLRLIDNLEDHDDVQEVYHNAEI 239