Pairwise Alignments

Query, 239 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 248 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score =  166 bits (419), Expect = 5e-46
 Identities = 93/233 (39%), Positives = 140/233 (60%), Gaps = 8/233 (3%)

Query: 8   RKASMAKTQGAKIKVYSKYGKEIYVCAKNGGTDPDMNLSLRHLITKAKKDQVPAHVIEKA 67
           RKA+    +G   K+++K+ +E+ V A+ GG+DPD N  LR  I KA    +    IE+A
Sbjct: 13  RKAAQDAKRG---KLFTKFIRELTVSAREGGSDPDSNPRLRIAIDKALGGNMTRDTIERA 69

Query: 68  LDKASGGA-GEDYQPARYEGFGPGGASVIVDCLTDNGNRTYQDVRQCFVKTGAKIGTPGV 126
           + + +G   G+  +   YEG+GPGG +V+V+ +TDN NRT   VR  F K+G  +GT G 
Sbjct: 70  IKRGAGELEGQQLETIIYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFSKSGGNLGTDGS 129

Query: 127 VAHMFDHQAVFQF-QGDDEEAILEALMMADAEVTDIEHEDGVITVFAPNTEFFKVKTALN 185
           VA++F  + V  +  G DE+A+++A + A AE   + ++DG I VF   TEF+ VK AL+
Sbjct: 130 VAYLFTKRGVLSYAPGTDEDALMDAALEAGAEDV-VSYDDGAIDVFTEPTEFYGVKDALD 188

Query: 186 EAFPDLTLDVEEITFVPQNRTVVSGEDAEKFQKFLDMLDDCDDVQQVYHNADI 238
            A      D  EI  +   +  +  E AEKF + +D L++ DDVQ+VYHNA+I
Sbjct: 189 AA--GFVSDNAEIAMIASTKAELDAETAEKFMRLIDTLEEHDDVQEVYHNAEI 239