Pairwise Alignments

Query, 513 a.a., ATP synthase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., type III secretion system ATPase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  154 bits (389), Expect = 6e-42
 Identities = 127/444 (28%), Positives = 201/444 (45%), Gaps = 40/444 (9%)

Query: 21  VVSEARNEGTIVSVSDGIIRIHG------LADVMQGEMIEL--PGNRYALALNLERDSVG 72
           ++ EA N G  V V   + ++ G      +  V  GE+  L  P + +    NL  + VG
Sbjct: 9   LLEEAVNSGPSVEVRGRVEQVVGTIIRAVVPGVKVGELCLLRNPWDDW----NLRAEVVG 64

Query: 73  AVV-------MGPYADLREGMKVTGTGRILEVPVGPELLGRVVNTLGEPIDGKGPIGAKQ 125
            V        +G    +    +V  TG IL +PVG +LLGRV++ LG+PIDG  P+  + 
Sbjct: 65  FVKHVALLTPLGNLQGISPATEVIPTGEILSIPVGEDLLGRVLDGLGDPIDGGPPLKPRT 124

Query: 126 TSPVEVIAPGVIDRKSVDQPVQTGYKSVDSMIPIGRGQRELIIGDRQTGKTALAIDAIIN 185
             PV    P  + R+ +D+P+  G + +D ++  G GQR  I      GK+ L + +II 
Sbjct: 125 RYPVYADPPNPMTRRIIDRPISLGLRVLDGVLTCGEGQRMGIFAAAGGGKSTL-LSSIIK 183

Query: 186 QKNSGIYSIYVAIGQKASTIANVVRKLEEHGALKNTIVVVASASESAALQYLAPYSGCAM 245
             ++ +  +   IG++   +   +         K  ++VV+++  S+  +  A Y+  A+
Sbjct: 184 GCSADV-CVLALIGERGREVREFIEHDLGPEGRKKAVLVVSTSDRSSMERLKAAYTATAI 242

Query: 246 GEYFRDRGEDALIVYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVN 305
            EYFRD+    L++ D +++   A R+I L    PP R  FP  VF    RL+ERA   +
Sbjct: 243 AEYFRDQRRSVLLMMDSVTRFGRAQREIGLAAGEPPTRRGFPPSVFSTLPRLMERAGNSD 302

Query: 306 EEYVERFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLQTELFNAGVR 365
                           GS+TAL  +  +  D++  +     SI DG I L  +L  A   
Sbjct: 303 R---------------GSITALYTVLVEGDDMTEPIADETRSILDGHIVLSRKLAAANHY 347

Query: 366 PAVDPGISVSRVGGAAQTKIVKKLSGGIRTALAAYRE---LAAFAQFSSDLDEATKRQLT 422
           PA+D   SVSRV  A   K  K  +  +R  LA Y E   L    ++    D+     L 
Sbjct: 348 PAIDVQASVSRVMNAIVGKEHKGAAQKLRKILAKYAEVELLVQIGEYKKGSDKEADDALA 407

Query: 423 HGQKVTELMKQKQYAPMSVFDQAL 446
               V   ++Q      S FD+ L
Sbjct: 408 RVGAVNAFLRQ-GLDERSTFDETL 430