Pairwise Alignments

Query, 288 a.a., ATP synthase subunit gamma from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., ATP synthase gamma chain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  176 bits (446), Expect = 6e-49
 Identities = 103/296 (34%), Positives = 166/296 (56%), Gaps = 11/296 (3%)

Query: 1   MAGAKEIRTKIGSVKSTQKITKAMEMVAASKMRRSQDAMESSRPYAQTIRKVIGHVANAS 60
           MA  KE++T+I SVKST+KIT AM+MVA++K+ ++Q A+E+  PY + + K++ +  +A 
Sbjct: 1   MASLKEVKTRINSVKSTRKITSAMKMVASAKLHKAQGAIENMLPYERKLNKILTNFLSAD 60

Query: 61  LEYRHPYLEEREAKRVGYIIISTDRGLCGGLNINLFKKAITDMQTWKEKGA-QIELAIIG 119
           L    PY++ RE KRV  +  S++  LCG  N N+ K  +  +  ++  G   I +  +G
Sbjct: 61  LPVESPYIKAREVKRVAIVAFSSNTSLCGAFNANVIKMLLQTVGEFRTLGQDNILIFPVG 120

Query: 120 SKATAFFNNSGAKVAAQVSGLGDSPSLEDLIGSVGVMLKKYDKGELDRLYLVFNQFVNTM 179
            K        G +       L D PS ++       +++ Y  GE+DR+ L+++ F +  
Sbjct: 121 KKVDEAVKRLGFEPQETSPTLSDKPSYQEASELAHRLMEMYVSGEIDRVELIYHHFKSMG 180

Query: 180 VQKPKIDQLLPLPKS---DSEDMQRDH-------MWDYIYEPEPKPLLDALLLRFIESQV 229
           VQ    +  LP+  +   D E+ Q++          DYI EP  + L+  L+   +  ++
Sbjct: 181 VQILLRETYLPIDLTRVVDEEEKQKEEEVQGGEIANDYIIEPSAEELIANLIPTVLSQKL 240

Query: 230 YQGVVENLACEQAARMVAMKAATDNASNLIDDLQLVYNKARQAAITQELSEIVGGA 285
           +   V++ A E AAR +AM+ ATDNA+ LI DL   YNK+RQ AIT EL +IVGG+
Sbjct: 241 FTAAVDSNASEHAARTLAMQVATDNANELIQDLTKQYNKSRQQAITNELLDIVGGS 296