Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., Multidrug resistance transporter, Bcr/CflA family from Pseudomonas fluorescens FW300-N2E2

 Score =  112 bits (280), Expect = 2e-29
 Identities = 89/370 (24%), Positives = 169/370 (45%), Gaps = 9/370 (2%)

Query: 24  MYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDKFGHRNTLIAGLLVFTL 83
           M LPA   +  A        + +L+VF+ G  LG LL+G  SD+ G R  L+AGL+VFT+
Sbjct: 1   MGLPAIADISHALGVSLAFASQTLSVFIFGFVLGPLLFGPLSDRIGRRPILLAGLVVFTI 60

Query: 84  ASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPSSVSQQLFATIMPLVALSP 143
           A     F+  +  LL  RF+Q     A A +  A+V  ++    +++L + +  +  L+P
Sbjct: 61  AGIACTFAQDINLLLSARFLQGCAAGAAATLPIAIVRDQFEGVQARKLQSHLALVNNLAP 120

Query: 144 ALAPQLGVLLADYFGWHSIFLTLTLMGIVLVVSTGLQTNEIAEPKTTSIAQDI----KGL 199
            +AP LG  +     W  I+  L + G++L +      +E A  K+++ A  +      +
Sbjct: 121 LIAPLLGSAILVVGNWRWIYAALAVCGVILWLRAQTSFDETATRKSSNAAASLLTSYLSV 180

Query: 200 LKSKTYLGNVMMFACASAAFFAYLTGMPEI-MAQLGYQARDIGLSFIPQTIAFMVGGYLG 258
           LKS+ +L + ++ A   A  FAY+   P + M  LG  +    + F    +  + G ++ 
Sbjct: 181 LKSRRFLVSTLIMAFNFAGMFAYIAASPLVFMNNLGMTSAGFAVLFALTAMGTIAGSWVN 240

Query: 259 KKAVQK-YGDELVLKQLIALFTLSAAMIFVASQWTLSSIWPILAPFCLIAVANGAMYPIV 317
            + +   + +  VL   +    L +  + V SQ  +  I+ + A   +  +  G + P  
Sbjct: 241 GRLIHAGFAEHRVLGGALLASLLISLGLVVESQLAIYPIYILTALVVMSNLCTGIVMPNA 300

Query: 318 VNRALSSAKQSPATAAGLQNSLQISVSSLSSALVAAM--ASQAQPVTGIAIVLCTGGLWL 375
            + AL     +    A L  + Q+   + +S L  A      +  + G+ +     G  L
Sbjct: 301 THSALEDLSITAGAGAALLRATQMLGGACASLLAGAFYDGQTSHAMAGVMLACAVLGA-L 359

Query: 376 GYVLSNRTLR 385
            +++ +R+++
Sbjct: 360 TFLIGHRSVK 369