Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 387 a.a., Bicyclomycin resistance protein from Pseudomonas fluorescens FW300-N2E2

 Score =  108 bits (269), Expect = 3e-28
 Identities = 89/365 (24%), Positives = 164/365 (44%), Gaps = 12/365 (3%)

Query: 9   VYLSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDKF 68
           V+L+ L M       +YLPA   +         +++  L+V+L+GMAL  LLWG  S + 
Sbjct: 14  VFLAQLGM------SIYLPALPDIARDLGADASRVSWGLSVYLIGMALPMLLWGSLSQRL 67

Query: 69  GHRNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPSSVS 128
           G +  L+A L ++ L +  L   +TV   L LR IQ IG    +V+ + ++   +   + 
Sbjct: 68  GRKPVLLAALGLYGLGNLALPLGTTVEAFLTLRLIQGIGASGISVMARVLIRDSFSGDLL 127

Query: 129 QQLFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLMGIVLVVSTG-LQTNEIAEP 187
            +  + I     ++  +   LG L+   FGW +IF  L  + + +  +    +   + + 
Sbjct: 128 AKALSWISIAFVIALGIGQYLGSLIQAVFGWEAIFQGLGAVSLAMAAAVSRARFPVLVQT 187

Query: 188 KTTSIAQDIKG-LLKSKTYLGNVMMFACASAAFFAYLTGMPEIMAQ-LGYQARDIGLSFI 245
                A  I G +L+ + +L   +          A+ T  P I+ +   +   + GL   
Sbjct: 188 GNGQSAWGIYGHILRQRAFLLPALAGGLGYGVIVAFNTAAPLILQESFHWSPIEYGLLGW 247

Query: 246 PQTIAFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFVASQWTLSSIWPIL-APFC 304
           P + A+++G  +    V + G   ++   IAL  L  +M  +A   TLSS+  +   P+C
Sbjct: 248 PVSAAYLLGALVVNAFVLRTGQRRMMGWGIAL-VLGGSMSMLAGSLTLSSVALLFWLPYC 306

Query: 305 LIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSALVAAMAS-QAQPVTG 363
                   +YPI ++ A   +  + A A  L   L   ++S+  A+ + + S QA P+  
Sbjct: 307 FAVFGQSLIYPISLSLANEGSPVAGAYAMALSGFLHQLMASVIGAMASLLLSQQAWPLAA 366

Query: 364 IAIVL 368
           +  +L
Sbjct: 367 LCALL 371