Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., multidrug resistance transporter, Bcr/CflA family from Pseudomonas fluorescens FW300-N2E2

 Score = 95.9 bits (237), Expect = 2e-24
 Identities = 65/284 (22%), Positives = 123/284 (43%), Gaps = 7/284 (2%)

Query: 11  LSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDKFGH 70
           L+ L+ +  ++T++ LPAF  +         ++ L+L+ F +  ALGQL+ G  +D++G 
Sbjct: 29  LAGLAAISMLSTNIILPAFAEIGKDLGVTARELGLTLSSFFITFALGQLVVGPLADRYGR 88

Query: 71  RNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPSSVSQQ 130
           +  ++ GL VF + +     ++T+  L+  R +QA+GVCA +V+ +A+    +      +
Sbjct: 89  QKLVLGGLSVFVVGTVIAGLATTLDVLIAGRVVQALGVCAASVLSRAIARDLFEGETLAR 148

Query: 131 LFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLMGIVLVVSTGLQTNEI------ 184
             +  M   A +P  +P  G +L+   GW +IF+ + L  +VL         E       
Sbjct: 149 ALSLTMIATAAAPGFSPLAGSVLSVTLGWRAIFILVGLAAVVLAFFYVRDLGETHPADRR 208

Query: 185 AEPKTTSIAQDIKGLLKSKTYLGNVMMFACASAAFFAYLTGMPEIMAQ-LGYQARDIGLS 243
           A     S+      L   K ++   +  +   +  FA     P I+ Q +G  +   GL 
Sbjct: 209 APHSAKSVVLAYGRLALDKRFILPALSMSLLMSGLFASFAAAPAILMQGIGLTSLQTGLY 268

Query: 244 FIPQTIAFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFV 287
           F          G    +   ++G  +     IA       ++ V
Sbjct: 269 FAATVFVVFAAGMAAPRLAHRHGARIATLVGIACAMAGGGLLLV 312



 Score = 28.9 bits (63), Expect = 3e-04
 Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 12/113 (10%)

Query: 177 TGLQTNEIAEPKTTSIAQDIKGLLKSKTYLGNVMMFACASAAFFAYLTGMPEIMAQLGYQ 236
           T  Q +   +P T  +   + GL        N+++ A A            EI   LG  
Sbjct: 10  TATQPHASTQPLTGKVVALLAGLAAISMLSTNIILPAFA------------EIGKDLGVT 57

Query: 237 ARDIGLSFIPQTIAFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFVAS 289
           AR++GL+     I F +G  +      +YG + ++   +++F +   +  +A+
Sbjct: 58  ARELGLTLSSFFITFALGQLVVGPLADRYGRQKLVLGGLSVFVVGTVIAGLAT 110