Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., MFS transporter from Pseudomonas fluorescens FW300-N2C3

 Score =  186 bits (473), Expect = 8e-52
 Identities = 113/373 (30%), Positives = 191/373 (51%), Gaps = 6/373 (1%)

Query: 3   VSFFQLVYLSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWG 62
           ++F  ++ L ALS  G +A D YLPAF  M TAF T  + I L+L  + +G+++GQL +G
Sbjct: 1   MNFRTILILGALSAFGPLAIDFYLPAFPAMATAFGTDEKHIQLTLAAYFLGLSIGQLAYG 60

Query: 63  LASDKFGHRNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKR 122
             +D+FG R  L+ G+ +FTLAS   A++  +  L+  RF+QA+G CA  VI +A+V  +
Sbjct: 61  PVADRFGRRIPLLTGVGLFTLASLACAYAPNLEWLIGARFVQALGGCAGMVISRAVVSDK 120

Query: 123 YPSSVSQQLFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLMGIVLVVSTGLQTN 182
             +  S ++F+ +M ++ L+P LAP LG LL +  GW SIF+ LT+   +   +  L   
Sbjct: 121 CDAVGSAKVFSQLMLVMGLAPILAPMLGGLLVNLHGWQSIFIALTVFSALASTAVALWLP 180

Query: 183 E-----IAEPKTTSIAQDIKGLLKSKTYLGNVMMFACASAAFFAYLTGMPEIMAQL-GYQ 236
           E     +     +   +    LL    YLG+ +    A A  FAY+ G P +  +L G  
Sbjct: 181 ESLPDHVPRQPLSGALRQYGRLLTDSVYLGHALTGGIAIAGMFAYIAGSPFVFIKLYGVP 240

Query: 237 ARDIGLSFIPQTIAFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFVASQWTLSSI 296
           A   G  F      F++   +  + + K G   +L + + ++  +   +   S    + +
Sbjct: 241 AEHFGWLFGTNAAGFILVAQVNARLLSKRGPAFLLSRAVWVYLGAGLSLLAVSSLQPAQL 300

Query: 297 WPILAPFCLIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSALVAAMAS 356
           WP+L P  +   + G + P     A++       +A+ +   LQ SV++ ++ALVAA+ +
Sbjct: 301 WPLLVPLFICIASLGCILPNASACAMNGQGARAGSASAMLGCLQFSVAAGAAALVAALHN 360

Query: 357 QAQPVTGIAIVLC 369
                  + I LC
Sbjct: 361 GTAVPMALVISLC 373