Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 390 a.a., drug resistance transporter, Bcr/CflA subfamily from Pseudomonas stutzeri RCH2

 Score =  187 bits (475), Expect = 5e-52
 Identities = 113/370 (30%), Positives = 202/370 (54%), Gaps = 10/370 (2%)

Query: 8   LVYLSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDK 67
           L+ L ALS  G +A DMYLPAF ++  +F T  + + LSL  + +G+A+GQL++G  +D+
Sbjct: 6   LLILGALSAFGPLAIDMYLPAFPLLAQSFGTSVDHVQLSLAAYFIGLAIGQLVYGPLADR 65

Query: 68  FGHRNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPSSV 127
           +G R  L+ G+ +FTLAS   AF+ ++  L+ +RF+QA+G CA  V+ +A+V        
Sbjct: 66  YGRRGPLLIGVTLFTLASLASAFAPSMDWLIGVRFVQALGGCAGMVVARAVVRDLCDPMT 125

Query: 128 SQQLFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLMGIVLVVSTGLQTNEI--- 184
           S ++F+ +M ++ L+P LAP  G  L   FGW SIF+ LTL   + +V+  L   E    
Sbjct: 126 SAKVFSQLMLVMGLAPILAPVAGGALLASFGWPSIFILLTLFSAMCLVAVTLWLPETYPA 185

Query: 185 ---AEPKTTSIAQDIKGLLKSKTYLGNVMMFACASAAFFAYLTGMPEIMAQL-GYQARDI 240
               +P + ++ Q ++ L + + ++G+V+  A   A  FAY+TG P +  +L G +    
Sbjct: 186 GLPRQPMSGALGQYLR-LFRDRFFIGHVLTGALCMAGMFAYITGSPFVFIELYGVKPEHF 244

Query: 241 GLSFIPQTIAFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFVASQWTLSSIWPIL 300
           G  F      F++   +  + V+  G E  +++ +  F  SA  +   +     S+WP+L
Sbjct: 245 GWLFGINAAGFILMAQVNVRLVRWRGPEFWVRRWVWFFFGSALALLAVAAAQPESLWPLL 304

Query: 301 AP-FCLIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSALVAAMASQAQ 359
            P FC ++   G + P     A++  + +  +A+ L  S+Q ++++++++ V A+ +   
Sbjct: 305 IPLFCCVSCL-GCLLPNATACAMADQRANAGSASALLGSMQFTIAAIAASAVGALHNGTA 363

Query: 360 PVTGIAIVLC 369
                 I LC
Sbjct: 364 VPLAAIISLC 373