Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., transporter from Sinorhizobium meliloti 1021

 Score =  142 bits (358), Expect = 2e-38
 Identities = 93/349 (26%), Positives = 169/349 (48%), Gaps = 8/349 (2%)

Query: 8   LVYLSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDK 67
           L+ ++   +L  +A D+YLP    M     T P  + L+L++++V + LGQ+++G  SD+
Sbjct: 16  LLLMAPFDILASLAMDIYLPIVPAMPGILGTSPAVVQLTLSLYMVMLGLGQIVFGPVSDR 75

Query: 68  FGHRNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRY---P 124
            G R  LI G ++F  AS  LA SS+    +  RF+QA+G  A  V   A +   Y   P
Sbjct: 76  IGRRPVLIGGAMLFAAASFCLAASSSAIPFVAFRFLQAVGASAALVATFATIRDVYADRP 135

Query: 125 SSVSQQLFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLMGIVLVVSTGLQTNEI 184
            SV   +++    ++A  PAL P  G +LA+ FGW SIF+TL  + I+ ++    + +E 
Sbjct: 136 ESV--VIYSLFSSILAFVPALGPITGAMLAERFGWRSIFVTLGALAIIALLQALPRWHE- 192

Query: 185 AEPKTTSIAQDIKG-LLKSKTYLGNVMMFACASAAFFAYLTGMPEIMA-QLGYQARDIGL 242
           + P   ++++   G LL+S  +    + F+ A   FF + +  P ++  + GY      L
Sbjct: 193 SRPSAAALSRHAFGPLLRSLAFWTYTLGFSAAMGTFFVFFSTSPRVLIDKAGYSELQFSL 252

Query: 243 SFIPQTIAFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFVASQWTLSSIWPILAP 302
           +F    I  ++     ++ V ++G    L + + +  L AA++     + + S W  + P
Sbjct: 253 AFATVAIVMIITARFAERFVSRWGTSGSLLRGMCMLLLGAALLIAGETFGVPSSWTFVMP 312

Query: 303 FCLIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSALV 351
             ++AV       +  N AL        +A  +   +Q  +   +  L+
Sbjct: 313 MWVMAVGIVFTVSVTANGALEDFGDMAGSAVAVYFCVQSLIVGTAGTLL 361