Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., drug resistance transporter, Bcr/CflA family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  119 bits (297), Expect = 2e-31
 Identities = 97/380 (25%), Positives = 180/380 (47%), Gaps = 18/380 (4%)

Query: 8   LVYLSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDK 67
           L  L +L +L  +A D+YLP+   M   F+    Q+  +L +FL  M +GQ+L G  +D+
Sbjct: 6   LPILMSLVLLSPLAIDIYLPSMPAMALDFSVDERQVQSTLVLFLFAMGVGQVLIGPLADR 65

Query: 68  FGHRNTLIAGLLVFTLASAGLAFSSTVWQLL-LLRFIQAIGVCAPAVIWQAMVIKRYPSS 126
           +G R   + G +++ ++S  LA ++  ++LL L R +Q +  C+ +++  + V   Y S+
Sbjct: 66  YGRRPVALFGTVLYVISSL-LAMAALEFELLQLARLLQGLAACSTSIVAFSAVRDSYSSA 124

Query: 127 VSQQLFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLMGIVLVVSTGLQTNEIAE 186
            S ++++ +   + + PALAP LG LLA  FGW S F  +   G+V+++  G +  E   
Sbjct: 125 DSARIYSYLNGAICVIPALAPTLGGLLAIQFGWRSTFAFMAFYGLVMLLVVGYRLPETRP 184

Query: 187 PKTTSIAQDIK-----GLLKSKTYLGNVMMFACASAAFFAYLT-GMPEIMAQLGYQARDI 240
             T S     +      +LK+  ++   +    A AA   Y++     ++ +LG      
Sbjct: 185 AHTESAGPLYRWGRYAPVLKNSHFMFYAVTCMAAMAAILCYVSYSSIWLIGKLGVSELAF 244

Query: 241 GLSFIPQTIAFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFVAS--QWT--LSSI 296
              F    +  +V  +     ++K G+   +   + L  L++ +  V     W   +++ 
Sbjct: 245 SGLFGLNAVVNVVACFAAPVVIRKLGNRPTVLVALGLMILASVLELVLQLPAWASPMAAS 304

Query: 297 WPILAPFCLIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSALVAAMAS 356
           +  + P  L+ V    +     + AL+   +   TA  L   +Q+S +S+ +ALV     
Sbjct: 305 FAFMLPMMLLCVGFAFLLGPATSMALAPFGERAGTATALLGFIQMSGASVITALV----- 359

Query: 357 QAQPVTG-IAIVLCTGGLWL 375
           Q  P+T   AI    GGL L
Sbjct: 360 QLTPMTAPYAIGYTMGGLAL 379