Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., bicyclomycin resistance protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  108 bits (271), Expect = 2e-28
 Identities = 92/360 (25%), Positives = 168/360 (46%), Gaps = 21/360 (5%)

Query: 6   FQLVYLSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLAS 65
           F +  L+A+  +  +A DMYLPA  ++  +  +    +  SL+V+L G A G LL+G  +
Sbjct: 18  FLIPLLAAIVAITPLAIDMYLPAMSVIALSLGSDVTHVQQSLSVYLAGYACGLLLFGPMA 77

Query: 66  DKFGHRNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPS 125
           D++G R  ++ GL  F + S  L+  ST      LRF+QA+   A  V+    V   Y  
Sbjct: 78  DRYGRRPLVLFGLTGFGICSLLLSHVSTPDAFFGLRFVQAMIGSAATVVVPGYVKILYGD 137

Query: 126 SVSQQLFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLT---LMGIVLVVSTGLQTN 182
           + ++ + + +  ++ L+P +AP +G  +  +  W  IF  L+   L+ + LV   GLQ  
Sbjct: 138 NTAKGM-SYVSLIMMLAPLIAPSIGSFILGFSHWEMIFYVLSGYALLALTLVY-FGLQIP 195

Query: 183 EIAEPK--TTSIAQDIKGLLKSKTYLGNVMMFACASAAFFAYLTGMPEIMAQL-GYQARD 239
           E+   K       +  + +L      G +      S AFF YLT  P +  ++ G  ++ 
Sbjct: 196 EVKTEKHQRPGFIEAYRTVLTRAGVKGFIASGVLTSFAFFCYLTASPFVFMEVYGLDSQH 255

Query: 240 IGLSFIPQTIAFMVGGYLGKKAVQKYGDELVLKQ------LIALFTLSAAMIFVASQWTL 293
             + F     A M+   L  + V ++G   +L+       + AL   +A  I +    TL
Sbjct: 256 FAMVFASNVGALMLANILNSRIVGRFGSLRLLRASTLCGLVFALLLCAANTIELGLYGTL 315

Query: 294 SSIWPILAPFCLIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSALVAA 353
            ++ P++A   +++V   A+        L   ++   TA  +  +L+  + +L+  L+AA
Sbjct: 316 LTLVPLMACLGIMSVNADAI-------VLLKFQRETGTATAVIGTLRFGIGALAGPLLAA 368