Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., inner membrane transport protein YdhC (RefSeq) from Shewanella amazonensis SB2B

 Score =  299 bits (765), Expect = 1e-85
 Identities = 161/388 (41%), Positives = 246/388 (63%), Gaps = 3/388 (0%)

Query: 10  YLSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDKFG 69
           YL+ LSMLGF+ATDMYLPAF  +E++  T    +A++LT FL G+A+GQL +G   DKFG
Sbjct: 17  YLALLSMLGFLATDMYLPAFNQIESSLNTSASLVAMTLTCFLGGLAIGQLAYGSLCDKFG 76

Query: 70  HRNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPSSVSQ 129
            RNTL+AGL VF ++S  L F+  +    +LR IQA G C+ AVIWQA+V++++    ++
Sbjct: 77  KRNTLMAGLGVFAVSSILLGFTENISVFFVLRVIQAFGACSAAVIWQALVMEKFDEGEAR 136

Query: 130 QLFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLMGIVLVVSTGLQTNEIAEPKT 189
           ++F++IMPLVALSPALAP +G  +++ FGW +IF+ L ++G++L   T     E +  ++
Sbjct: 137 KVFSSIMPLVALSPALAPLMGAWVSEQFGWRAIFIILAIVGLLLAAMTPALAKE-SRTRS 195

Query: 190 TSIAQDIKGLLKSKTYLGNVMMFACASAAFFAYLTGMPEIMAQLGYQARDIGLSFIPQTI 249
            S    +K +LK++ +  NV +F   SAAFF YLT  P +M   GY A +IGLSFIPQT+
Sbjct: 196 QSEPILVKNILKNRAFQNNVAIFGACSAAFFCYLTLWPAVMQHHGYAAAEIGLSFIPQTL 255

Query: 250 AFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFVASQWTLSSIWPILAPFCLIAVA 309
           AFM+GG+  KKA+  +  E +   LI  F + + ++F+ +Q   + I  +L  F  +A  
Sbjct: 256 AFMLGGFACKKALHSHSPEAIKNMLITGFVVLSLVLFLLTQLG-AGILAVLWVFAALAAI 314

Query: 310 NGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSALVAAMASQAQPVTGIAIVLC 369
           NGA+YP++V  AL+    +   AAG QN LQ+ ++ ++SA VA +A   +   G  I++C
Sbjct: 315 NGAVYPLLVTDALAPFSNNATKAAGWQNFLQLGMAFIASAAVALIAHWFEKAIGTGILVC 374

Query: 370 TGGLWLGYVLSN-RTLREQFTTPDNSRV 396
              + + +   N  T R  +  PD +R+
Sbjct: 375 AAIVLVAWWRMNWSTWRGSWCFPDPARM 402