Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., Bcr/CflA subfamily drug resistance transporter (RefSeq) from Shewanella loihica PV-4

 Score =  122 bits (305), Expect = 2e-32
 Identities = 97/383 (25%), Positives = 178/383 (46%), Gaps = 28/383 (7%)

Query: 8   LVYLSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDK 67
           L  L  + +L  +A D+YLP+  +M   FA    Q+  +L +FL  M +GQ+L G  +D+
Sbjct: 6   LPILMLMVVLSPLAIDIYLPSMPVMAAEFAVSASQVQSTLVLFLFAMGVGQVLIGPLADR 65

Query: 68  FGHRNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPSSV 127
           +G R   + GLL++  +S   A +     L L R +Q +  C+ +++  + V   +    
Sbjct: 66  YGRRPIALGGLLLYIASSLLAAVAMEFQWLQLARVLQGLAACSTSIVVFSAVRDCFTPKE 125

Query: 128 SQQLFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLMGIVLVVSTGLQTNEIAEP 187
             + ++ +  ++ + PALAP LG LLA  FGW S F+ +TL  I++++  G +  E    
Sbjct: 126 GARYYSYLNGVICVIPALAPTLGGLLALQFGWRSTFVFMTLYAIIIMIIVGYRLPETRPA 185

Query: 188 KTTSIAQDIKGLLKSKTYLGNVMMFACASAAFFAYLTGMPEIMAQLGYQ----ARDIGLS 243
            T +     +G L   +    V+M        FA + GM  I+A + Y        IG+S
Sbjct: 186 NTVT-----EGPLYRWSRYKPVLMDPHFMFYAFACMAGMAAILAYVSYSPVWLIETIGVS 240

Query: 244 FIPQTIAFMVGG-------YLGKKAVQKYGDE-LVLKQLIALFTLSAAMIFVASQWT--- 292
            +  +  F +         +     +QK G+   V+  L A+  L +A++ +A QW    
Sbjct: 241 ELTFSGLFGLNALVNIGACFAAPVVIQKLGNRPTVIVALSAM--LVSALLQLAVQWAGPQ 298

Query: 293 --LSSIWPILAPFCLIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSAL 350
             L++ +  + P  L+ +    +     + AL+   +   TA  +   +Q+S     +++
Sbjct: 299 TGLAAAFGFMLPMMLLCIGFALLLGPATSMALAGFGERAGTATAMLGFIQMS----GASI 354

Query: 351 VAAMASQAQPVTGIAIVLCTGGL 373
           +A +  Q       A+V+  GGL
Sbjct: 355 LAGLVQQTSLTAPYAVVVVMGGL 377